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Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types
Pancreatic islets of Langerhans contain several specialized endocrine cell types, which are commonly identified by the expression of single marker genes. However, the established marker genes cannot capture the complete spectrum of cellular heterogeneity in human pancreatic islets, and existing bulk...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784001/ https://www.ncbi.nlm.nih.gov/pubmed/26691212 http://dx.doi.org/10.15252/embr.201540946 |
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author | Li, Jin Klughammer, Johanna Farlik, Matthias Penz, Thomas Spittler, Andreas Barbieux, Charlotte Berishvili, Ekaterine Bock, Christoph Kubicek, Stefan |
author_facet | Li, Jin Klughammer, Johanna Farlik, Matthias Penz, Thomas Spittler, Andreas Barbieux, Charlotte Berishvili, Ekaterine Bock, Christoph Kubicek, Stefan |
author_sort | Li, Jin |
collection | PubMed |
description | Pancreatic islets of Langerhans contain several specialized endocrine cell types, which are commonly identified by the expression of single marker genes. However, the established marker genes cannot capture the complete spectrum of cellular heterogeneity in human pancreatic islets, and existing bulk transcriptome datasets provide averages across several cell populations. To dissect the cellular composition of the human pancreatic islet and to establish transcriptomes for all major cell types, we performed single‐cell RNA sequencing on 70 cells sorted from human primary tissue. We used this dataset to validate previously described marker genes at the single‐cell level and to identify specifically expressed transcription factors for all islet cell subtypes. All data are available for browsing and download, thus establishing a useful resource of single‐cell expression profiles for endocrine cells in human pancreatic islets. |
format | Online Article Text |
id | pubmed-4784001 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-47840012016-04-08 Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types Li, Jin Klughammer, Johanna Farlik, Matthias Penz, Thomas Spittler, Andreas Barbieux, Charlotte Berishvili, Ekaterine Bock, Christoph Kubicek, Stefan EMBO Rep Scientific Reports Pancreatic islets of Langerhans contain several specialized endocrine cell types, which are commonly identified by the expression of single marker genes. However, the established marker genes cannot capture the complete spectrum of cellular heterogeneity in human pancreatic islets, and existing bulk transcriptome datasets provide averages across several cell populations. To dissect the cellular composition of the human pancreatic islet and to establish transcriptomes for all major cell types, we performed single‐cell RNA sequencing on 70 cells sorted from human primary tissue. We used this dataset to validate previously described marker genes at the single‐cell level and to identify specifically expressed transcription factors for all islet cell subtypes. All data are available for browsing and download, thus establishing a useful resource of single‐cell expression profiles for endocrine cells in human pancreatic islets. John Wiley and Sons Inc. 2015-12-21 2016-02 /pmc/articles/PMC4784001/ /pubmed/26691212 http://dx.doi.org/10.15252/embr.201540946 Text en © 2015 The Authors. Published under the terms of the CC BY NC ND 4.0 license This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs 4.0 (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Scientific Reports Li, Jin Klughammer, Johanna Farlik, Matthias Penz, Thomas Spittler, Andreas Barbieux, Charlotte Berishvili, Ekaterine Bock, Christoph Kubicek, Stefan Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types |
title | Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types |
title_full | Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types |
title_fullStr | Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types |
title_full_unstemmed | Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types |
title_short | Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types |
title_sort | single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types |
topic | Scientific Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784001/ https://www.ncbi.nlm.nih.gov/pubmed/26691212 http://dx.doi.org/10.15252/embr.201540946 |
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