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Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types

Pancreatic islets of Langerhans contain several specialized endocrine cell types, which are commonly identified by the expression of single marker genes. However, the established marker genes cannot capture the complete spectrum of cellular heterogeneity in human pancreatic islets, and existing bulk...

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Autores principales: Li, Jin, Klughammer, Johanna, Farlik, Matthias, Penz, Thomas, Spittler, Andreas, Barbieux, Charlotte, Berishvili, Ekaterine, Bock, Christoph, Kubicek, Stefan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784001/
https://www.ncbi.nlm.nih.gov/pubmed/26691212
http://dx.doi.org/10.15252/embr.201540946
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author Li, Jin
Klughammer, Johanna
Farlik, Matthias
Penz, Thomas
Spittler, Andreas
Barbieux, Charlotte
Berishvili, Ekaterine
Bock, Christoph
Kubicek, Stefan
author_facet Li, Jin
Klughammer, Johanna
Farlik, Matthias
Penz, Thomas
Spittler, Andreas
Barbieux, Charlotte
Berishvili, Ekaterine
Bock, Christoph
Kubicek, Stefan
author_sort Li, Jin
collection PubMed
description Pancreatic islets of Langerhans contain several specialized endocrine cell types, which are commonly identified by the expression of single marker genes. However, the established marker genes cannot capture the complete spectrum of cellular heterogeneity in human pancreatic islets, and existing bulk transcriptome datasets provide averages across several cell populations. To dissect the cellular composition of the human pancreatic islet and to establish transcriptomes for all major cell types, we performed single‐cell RNA sequencing on 70 cells sorted from human primary tissue. We used this dataset to validate previously described marker genes at the single‐cell level and to identify specifically expressed transcription factors for all islet cell subtypes. All data are available for browsing and download, thus establishing a useful resource of single‐cell expression profiles for endocrine cells in human pancreatic islets.
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spelling pubmed-47840012016-04-08 Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types Li, Jin Klughammer, Johanna Farlik, Matthias Penz, Thomas Spittler, Andreas Barbieux, Charlotte Berishvili, Ekaterine Bock, Christoph Kubicek, Stefan EMBO Rep Scientific Reports Pancreatic islets of Langerhans contain several specialized endocrine cell types, which are commonly identified by the expression of single marker genes. However, the established marker genes cannot capture the complete spectrum of cellular heterogeneity in human pancreatic islets, and existing bulk transcriptome datasets provide averages across several cell populations. To dissect the cellular composition of the human pancreatic islet and to establish transcriptomes for all major cell types, we performed single‐cell RNA sequencing on 70 cells sorted from human primary tissue. We used this dataset to validate previously described marker genes at the single‐cell level and to identify specifically expressed transcription factors for all islet cell subtypes. All data are available for browsing and download, thus establishing a useful resource of single‐cell expression profiles for endocrine cells in human pancreatic islets. John Wiley and Sons Inc. 2015-12-21 2016-02 /pmc/articles/PMC4784001/ /pubmed/26691212 http://dx.doi.org/10.15252/embr.201540946 Text en © 2015 The Authors. Published under the terms of the CC BY NC ND 4.0 license This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs 4.0 (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Scientific Reports
Li, Jin
Klughammer, Johanna
Farlik, Matthias
Penz, Thomas
Spittler, Andreas
Barbieux, Charlotte
Berishvili, Ekaterine
Bock, Christoph
Kubicek, Stefan
Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types
title Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types
title_full Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types
title_fullStr Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types
title_full_unstemmed Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types
title_short Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types
title_sort single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types
topic Scientific Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784001/
https://www.ncbi.nlm.nih.gov/pubmed/26691212
http://dx.doi.org/10.15252/embr.201540946
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