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A simple, accurate and universal method for quantification of PCR

BACKGROUND: Research into gene expression enables scientists to decipher the complex regulatory networks that control fundamental biological processes. Quantitative real-time PCR (qPCR) is a powerful and ubiquitous method for interrogation of gene expression. Accurate quantification is essential for...

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Autores principales: Boulter, Nicky, Suarez, Francia Garces, Schibeci, Stephen, Sunderland, Trevor, Tolhurst, Ornella, Hunter, Tegan, Hodge, George, Handelsman, David, Simanainen, Ulla, Hendriks, Edward, Duggan, Karen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784296/
https://www.ncbi.nlm.nih.gov/pubmed/26956612
http://dx.doi.org/10.1186/s12896-016-0256-y
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author Boulter, Nicky
Suarez, Francia Garces
Schibeci, Stephen
Sunderland, Trevor
Tolhurst, Ornella
Hunter, Tegan
Hodge, George
Handelsman, David
Simanainen, Ulla
Hendriks, Edward
Duggan, Karen
author_facet Boulter, Nicky
Suarez, Francia Garces
Schibeci, Stephen
Sunderland, Trevor
Tolhurst, Ornella
Hunter, Tegan
Hodge, George
Handelsman, David
Simanainen, Ulla
Hendriks, Edward
Duggan, Karen
author_sort Boulter, Nicky
collection PubMed
description BACKGROUND: Research into gene expression enables scientists to decipher the complex regulatory networks that control fundamental biological processes. Quantitative real-time PCR (qPCR) is a powerful and ubiquitous method for interrogation of gene expression. Accurate quantification is essential for correct interpretation of qPCR data. However, conventional relative and absolute quantification methodologies often give erroneous results or are laborious to perform. To overcome these failings, we developed an accurate, simple to use, universal calibrator, AccuCal. RESULTS: Herein, we show that AccuCal quantification can be used with either dye- or probe-based detection methods and is accurate over a dynamic range of ≥10(5) copies, for amplicons up to 500 base pairs (bp). By providing absolute quantification of all genes of interest, AccuCal exposes, and circumvents, the well-known biases of qPCR, thus allowing objective experimental conclusions to be drawn. CONCLUSION: We propose that AccuCal supersedes the traditional quantification methods of PCR. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12896-016-0256-y) contains supplementary material, which is available to authorized users.
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spelling pubmed-47842962016-03-10 A simple, accurate and universal method for quantification of PCR Boulter, Nicky Suarez, Francia Garces Schibeci, Stephen Sunderland, Trevor Tolhurst, Ornella Hunter, Tegan Hodge, George Handelsman, David Simanainen, Ulla Hendriks, Edward Duggan, Karen BMC Biotechnol Methodology Article BACKGROUND: Research into gene expression enables scientists to decipher the complex regulatory networks that control fundamental biological processes. Quantitative real-time PCR (qPCR) is a powerful and ubiquitous method for interrogation of gene expression. Accurate quantification is essential for correct interpretation of qPCR data. However, conventional relative and absolute quantification methodologies often give erroneous results or are laborious to perform. To overcome these failings, we developed an accurate, simple to use, universal calibrator, AccuCal. RESULTS: Herein, we show that AccuCal quantification can be used with either dye- or probe-based detection methods and is accurate over a dynamic range of ≥10(5) copies, for amplicons up to 500 base pairs (bp). By providing absolute quantification of all genes of interest, AccuCal exposes, and circumvents, the well-known biases of qPCR, thus allowing objective experimental conclusions to be drawn. CONCLUSION: We propose that AccuCal supersedes the traditional quantification methods of PCR. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12896-016-0256-y) contains supplementary material, which is available to authorized users. BioMed Central 2016-03-09 /pmc/articles/PMC4784296/ /pubmed/26956612 http://dx.doi.org/10.1186/s12896-016-0256-y Text en © Boulter et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology Article
Boulter, Nicky
Suarez, Francia Garces
Schibeci, Stephen
Sunderland, Trevor
Tolhurst, Ornella
Hunter, Tegan
Hodge, George
Handelsman, David
Simanainen, Ulla
Hendriks, Edward
Duggan, Karen
A simple, accurate and universal method for quantification of PCR
title A simple, accurate and universal method for quantification of PCR
title_full A simple, accurate and universal method for quantification of PCR
title_fullStr A simple, accurate and universal method for quantification of PCR
title_full_unstemmed A simple, accurate and universal method for quantification of PCR
title_short A simple, accurate and universal method for quantification of PCR
title_sort simple, accurate and universal method for quantification of pcr
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784296/
https://www.ncbi.nlm.nih.gov/pubmed/26956612
http://dx.doi.org/10.1186/s12896-016-0256-y
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