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Data-collection strategy for challenging native SAD phasing

Recent improvements in data-collection strategies have pushed the limits of native SAD (single-wavelength anomalous diffraction) phasing, a method that uses the weak anomalous signal of light elements naturally present in macromolecules. These involve the merging of multiple data sets from either mu...

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Autores principales: Olieric, Vincent, Weinert, Tobias, Finke, Aaron D., Anders, Carolin, Li, Dianfan, Olieric, Natacha, Borca, Camelia N., Steinmetz, Michel O., Caffrey, Martin, Jinek, Martin, Wang, Meitian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784673/
https://www.ncbi.nlm.nih.gov/pubmed/26960129
http://dx.doi.org/10.1107/S2059798315024110
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author Olieric, Vincent
Weinert, Tobias
Finke, Aaron D.
Anders, Carolin
Li, Dianfan
Olieric, Natacha
Borca, Camelia N.
Steinmetz, Michel O.
Caffrey, Martin
Jinek, Martin
Wang, Meitian
author_facet Olieric, Vincent
Weinert, Tobias
Finke, Aaron D.
Anders, Carolin
Li, Dianfan
Olieric, Natacha
Borca, Camelia N.
Steinmetz, Michel O.
Caffrey, Martin
Jinek, Martin
Wang, Meitian
author_sort Olieric, Vincent
collection PubMed
description Recent improvements in data-collection strategies have pushed the limits of native SAD (single-wavelength anomalous diffraction) phasing, a method that uses the weak anomalous signal of light elements naturally present in macromolecules. These involve the merging of multiple data sets from either multiple crystals or from a single crystal collected in multiple orientations at a low X-ray dose. Both approaches yield data of high multiplicity while minimizing radiation damage and systematic error, thus ensuring accurate measurements of the anomalous differences. Here, the combined use of these two strategies is described to solve cases of native SAD phasing that were particular challenges: the integral membrane diacylglycerol kinase (DgkA) with a low Bijvoet ratio of 1% and the large 200 kDa complex of the CRISPR-associated endonuclease (Cas9) bound to guide RNA and target DNA crystallized in the low-symmetry space group C2. The optimal native SAD data-collection strategy based on systematic measurements performed on the 266 kDa multiprotein/multiligand tubulin complex is discussed.
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spelling pubmed-47846732016-03-22 Data-collection strategy for challenging native SAD phasing Olieric, Vincent Weinert, Tobias Finke, Aaron D. Anders, Carolin Li, Dianfan Olieric, Natacha Borca, Camelia N. Steinmetz, Michel O. Caffrey, Martin Jinek, Martin Wang, Meitian Acta Crystallogr D Struct Biol Research Papers Recent improvements in data-collection strategies have pushed the limits of native SAD (single-wavelength anomalous diffraction) phasing, a method that uses the weak anomalous signal of light elements naturally present in macromolecules. These involve the merging of multiple data sets from either multiple crystals or from a single crystal collected in multiple orientations at a low X-ray dose. Both approaches yield data of high multiplicity while minimizing radiation damage and systematic error, thus ensuring accurate measurements of the anomalous differences. Here, the combined use of these two strategies is described to solve cases of native SAD phasing that were particular challenges: the integral membrane diacylglycerol kinase (DgkA) with a low Bijvoet ratio of 1% and the large 200 kDa complex of the CRISPR-associated endonuclease (Cas9) bound to guide RNA and target DNA crystallized in the low-symmetry space group C2. The optimal native SAD data-collection strategy based on systematic measurements performed on the 266 kDa multiprotein/multiligand tubulin complex is discussed. International Union of Crystallography 2016-03-01 /pmc/articles/PMC4784673/ /pubmed/26960129 http://dx.doi.org/10.1107/S2059798315024110 Text en © Olieric et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Olieric, Vincent
Weinert, Tobias
Finke, Aaron D.
Anders, Carolin
Li, Dianfan
Olieric, Natacha
Borca, Camelia N.
Steinmetz, Michel O.
Caffrey, Martin
Jinek, Martin
Wang, Meitian
Data-collection strategy for challenging native SAD phasing
title Data-collection strategy for challenging native SAD phasing
title_full Data-collection strategy for challenging native SAD phasing
title_fullStr Data-collection strategy for challenging native SAD phasing
title_full_unstemmed Data-collection strategy for challenging native SAD phasing
title_short Data-collection strategy for challenging native SAD phasing
title_sort data-collection strategy for challenging native sad phasing
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784673/
https://www.ncbi.nlm.nih.gov/pubmed/26960129
http://dx.doi.org/10.1107/S2059798315024110
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