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Data-collection strategy for challenging native SAD phasing
Recent improvements in data-collection strategies have pushed the limits of native SAD (single-wavelength anomalous diffraction) phasing, a method that uses the weak anomalous signal of light elements naturally present in macromolecules. These involve the merging of multiple data sets from either mu...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784673/ https://www.ncbi.nlm.nih.gov/pubmed/26960129 http://dx.doi.org/10.1107/S2059798315024110 |
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author | Olieric, Vincent Weinert, Tobias Finke, Aaron D. Anders, Carolin Li, Dianfan Olieric, Natacha Borca, Camelia N. Steinmetz, Michel O. Caffrey, Martin Jinek, Martin Wang, Meitian |
author_facet | Olieric, Vincent Weinert, Tobias Finke, Aaron D. Anders, Carolin Li, Dianfan Olieric, Natacha Borca, Camelia N. Steinmetz, Michel O. Caffrey, Martin Jinek, Martin Wang, Meitian |
author_sort | Olieric, Vincent |
collection | PubMed |
description | Recent improvements in data-collection strategies have pushed the limits of native SAD (single-wavelength anomalous diffraction) phasing, a method that uses the weak anomalous signal of light elements naturally present in macromolecules. These involve the merging of multiple data sets from either multiple crystals or from a single crystal collected in multiple orientations at a low X-ray dose. Both approaches yield data of high multiplicity while minimizing radiation damage and systematic error, thus ensuring accurate measurements of the anomalous differences. Here, the combined use of these two strategies is described to solve cases of native SAD phasing that were particular challenges: the integral membrane diacylglycerol kinase (DgkA) with a low Bijvoet ratio of 1% and the large 200 kDa complex of the CRISPR-associated endonuclease (Cas9) bound to guide RNA and target DNA crystallized in the low-symmetry space group C2. The optimal native SAD data-collection strategy based on systematic measurements performed on the 266 kDa multiprotein/multiligand tubulin complex is discussed. |
format | Online Article Text |
id | pubmed-4784673 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-47846732016-03-22 Data-collection strategy for challenging native SAD phasing Olieric, Vincent Weinert, Tobias Finke, Aaron D. Anders, Carolin Li, Dianfan Olieric, Natacha Borca, Camelia N. Steinmetz, Michel O. Caffrey, Martin Jinek, Martin Wang, Meitian Acta Crystallogr D Struct Biol Research Papers Recent improvements in data-collection strategies have pushed the limits of native SAD (single-wavelength anomalous diffraction) phasing, a method that uses the weak anomalous signal of light elements naturally present in macromolecules. These involve the merging of multiple data sets from either multiple crystals or from a single crystal collected in multiple orientations at a low X-ray dose. Both approaches yield data of high multiplicity while minimizing radiation damage and systematic error, thus ensuring accurate measurements of the anomalous differences. Here, the combined use of these two strategies is described to solve cases of native SAD phasing that were particular challenges: the integral membrane diacylglycerol kinase (DgkA) with a low Bijvoet ratio of 1% and the large 200 kDa complex of the CRISPR-associated endonuclease (Cas9) bound to guide RNA and target DNA crystallized in the low-symmetry space group C2. The optimal native SAD data-collection strategy based on systematic measurements performed on the 266 kDa multiprotein/multiligand tubulin complex is discussed. International Union of Crystallography 2016-03-01 /pmc/articles/PMC4784673/ /pubmed/26960129 http://dx.doi.org/10.1107/S2059798315024110 Text en © Olieric et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Olieric, Vincent Weinert, Tobias Finke, Aaron D. Anders, Carolin Li, Dianfan Olieric, Natacha Borca, Camelia N. Steinmetz, Michel O. Caffrey, Martin Jinek, Martin Wang, Meitian Data-collection strategy for challenging native SAD phasing |
title | Data-collection strategy for challenging native SAD phasing |
title_full | Data-collection strategy for challenging native SAD phasing |
title_fullStr | Data-collection strategy for challenging native SAD phasing |
title_full_unstemmed | Data-collection strategy for challenging native SAD phasing |
title_short | Data-collection strategy for challenging native SAD phasing |
title_sort | data-collection strategy for challenging native sad phasing |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784673/ https://www.ncbi.nlm.nih.gov/pubmed/26960129 http://dx.doi.org/10.1107/S2059798315024110 |
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