Consequential considerations when mapping tRNA fragments

We examine several of the choices that went into the design of tDRmapper, a recently reported tool for identifying transfer RNA (tRNA) fragments in deep sequencing data, evaluate them in the context of currently available knowledge, and discuss their potential impact on the output that the tool gene...

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Detalles Bibliográficos
Autores principales: Telonis, Aristeidis G., Loher, Phillipe, Kirino, Yohei, Rigoutsos, Isidore
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Correspondence
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4785646/
https://www.ncbi.nlm.nih.gov/pubmed/26961774
http://dx.doi.org/10.1186/s12859-016-0921-0
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author Telonis, Aristeidis G.
Loher, Phillipe
Kirino, Yohei
Rigoutsos, Isidore
author_facet Telonis, Aristeidis G.
Loher, Phillipe
Kirino, Yohei
Rigoutsos, Isidore
author_sort Telonis, Aristeidis G.
collection PubMed
description We examine several of the choices that went into the design of tDRmapper, a recently reported tool for identifying transfer RNA (tRNA) fragments in deep sequencing data, evaluate them in the context of currently available knowledge, and discuss their potential impact on the output that the tool generates.
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spelling pubmed-47856462016-03-11 Consequential considerations when mapping tRNA fragments Telonis, Aristeidis G. Loher, Phillipe Kirino, Yohei Rigoutsos, Isidore BMC Bioinformatics Correspondence We examine several of the choices that went into the design of tDRmapper, a recently reported tool for identifying transfer RNA (tRNA) fragments in deep sequencing data, evaluate them in the context of currently available knowledge, and discuss their potential impact on the output that the tool generates. BioMed Central 2016-03-10 /pmc/articles/PMC4785646/ /pubmed/26961774 http://dx.doi.org/10.1186/s12859-016-0921-0 Text en © Telonis et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Correspondence
Telonis, Aristeidis G.
Loher, Phillipe
Kirino, Yohei
Rigoutsos, Isidore
Consequential considerations when mapping tRNA fragments
title Consequential considerations when mapping tRNA fragments
title_full Consequential considerations when mapping tRNA fragments
title_fullStr Consequential considerations when mapping tRNA fragments
title_full_unstemmed Consequential considerations when mapping tRNA fragments
title_short Consequential considerations when mapping tRNA fragments
title_sort consequential considerations when mapping trna fragments
topic Correspondence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4785646/
https://www.ncbi.nlm.nih.gov/pubmed/26961774
http://dx.doi.org/10.1186/s12859-016-0921-0
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