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A strategy for residual error modeling incorporating scedasticity of variance and distribution shape
Nonlinear mixed effects models parameters are commonly estimated using maximum likelihood. The properties of these estimators depend on the assumption that residual errors are independent and normally distributed with mean zero and correctly defined variance. Violations of this assumption can cause...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791481/ https://www.ncbi.nlm.nih.gov/pubmed/26679003 http://dx.doi.org/10.1007/s10928-015-9460-y |
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author | Dosne, Anne-Gaëlle Bergstrand, Martin Karlsson, Mats O. |
author_facet | Dosne, Anne-Gaëlle Bergstrand, Martin Karlsson, Mats O. |
author_sort | Dosne, Anne-Gaëlle |
collection | PubMed |
description | Nonlinear mixed effects models parameters are commonly estimated using maximum likelihood. The properties of these estimators depend on the assumption that residual errors are independent and normally distributed with mean zero and correctly defined variance. Violations of this assumption can cause bias in parameter estimates, invalidate the likelihood ratio test and preclude simulation of real-life like data. The choice of error model is mostly done on a case-by-case basis from a limited set of commonly used models. In this work, two strategies are proposed to extend and unify residual error modeling: a dynamic transform-both-sides approach combined with a power error model (dTBS) capable of handling skewed and/or heteroscedastic residuals, and a t-distributed residual error model allowing for symmetric heavy tails. Ten published pharmacokinetic and pharmacodynamic models as well as stochastic simulation and estimation were used to evaluate the two approaches. dTBS always led to significant improvements in objective function value, with most examples displaying some degree of right-skewness and variances proportional to predictions raised to powers between 0 and 1. The t-distribution led to significant improvement for 5 out of 10 models with degrees of freedom between 3 and 9. Six models were most improved by the t-distribution while four models benefited more from dTBS. Changes in other model parameter estimates were observed. In conclusion, the use of dTBS and/or t-distribution models provides a flexible and easy-to-use framework capable of characterizing all commonly encountered residual error distributions. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10928-015-9460-y) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4791481 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-47914812016-04-09 A strategy for residual error modeling incorporating scedasticity of variance and distribution shape Dosne, Anne-Gaëlle Bergstrand, Martin Karlsson, Mats O. J Pharmacokinet Pharmacodyn Original Paper Nonlinear mixed effects models parameters are commonly estimated using maximum likelihood. The properties of these estimators depend on the assumption that residual errors are independent and normally distributed with mean zero and correctly defined variance. Violations of this assumption can cause bias in parameter estimates, invalidate the likelihood ratio test and preclude simulation of real-life like data. The choice of error model is mostly done on a case-by-case basis from a limited set of commonly used models. In this work, two strategies are proposed to extend and unify residual error modeling: a dynamic transform-both-sides approach combined with a power error model (dTBS) capable of handling skewed and/or heteroscedastic residuals, and a t-distributed residual error model allowing for symmetric heavy tails. Ten published pharmacokinetic and pharmacodynamic models as well as stochastic simulation and estimation were used to evaluate the two approaches. dTBS always led to significant improvements in objective function value, with most examples displaying some degree of right-skewness and variances proportional to predictions raised to powers between 0 and 1. The t-distribution led to significant improvement for 5 out of 10 models with degrees of freedom between 3 and 9. Six models were most improved by the t-distribution while four models benefited more from dTBS. Changes in other model parameter estimates were observed. In conclusion, the use of dTBS and/or t-distribution models provides a flexible and easy-to-use framework capable of characterizing all commonly encountered residual error distributions. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10928-015-9460-y) contains supplementary material, which is available to authorized users. Springer US 2015-12-17 2016 /pmc/articles/PMC4791481/ /pubmed/26679003 http://dx.doi.org/10.1007/s10928-015-9460-y Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Paper Dosne, Anne-Gaëlle Bergstrand, Martin Karlsson, Mats O. A strategy for residual error modeling incorporating scedasticity of variance and distribution shape |
title | A strategy for residual error modeling incorporating scedasticity of variance and distribution shape |
title_full | A strategy for residual error modeling incorporating scedasticity of variance and distribution shape |
title_fullStr | A strategy for residual error modeling incorporating scedasticity of variance and distribution shape |
title_full_unstemmed | A strategy for residual error modeling incorporating scedasticity of variance and distribution shape |
title_short | A strategy for residual error modeling incorporating scedasticity of variance and distribution shape |
title_sort | strategy for residual error modeling incorporating scedasticity of variance and distribution shape |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791481/ https://www.ncbi.nlm.nih.gov/pubmed/26679003 http://dx.doi.org/10.1007/s10928-015-9460-y |
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