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Accurate Determination of Conformational Transitions in Oligomeric Membrane Proteins
The structural dynamics governing collective motions in oligomeric membrane proteins play key roles in vital biomolecular processes at cellular membranes. In this study, we present a structural refinement approach that combines solid-state NMR experiments and molecular simulations to accurately desc...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791661/ https://www.ncbi.nlm.nih.gov/pubmed/26975211 http://dx.doi.org/10.1038/srep23063 |
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author | Sanz-Hernández, Máximo Vostrikov, Vitaly V. Veglia, Gianluigi De Simone, Alfonso |
author_facet | Sanz-Hernández, Máximo Vostrikov, Vitaly V. Veglia, Gianluigi De Simone, Alfonso |
author_sort | Sanz-Hernández, Máximo |
collection | PubMed |
description | The structural dynamics governing collective motions in oligomeric membrane proteins play key roles in vital biomolecular processes at cellular membranes. In this study, we present a structural refinement approach that combines solid-state NMR experiments and molecular simulations to accurately describe concerted conformational transitions identifying the overall structural, dynamical, and topological states of oligomeric membrane proteins. The accuracy of the structural ensembles generated with this method is shown to reach the statistical error limit, and is further demonstrated by correctly reproducing orthogonal NMR data. We demonstrate the accuracy of this approach by characterising the pentameric state of phospholamban, a key player in the regulation of calcium uptake in the sarcoplasmic reticulum, and by probing its dynamical activation upon phosphorylation. Our results underline the importance of using an ensemble approach to characterise the conformational transitions that are often responsible for the biological function of oligomeric membrane protein states. |
format | Online Article Text |
id | pubmed-4791661 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-47916612016-03-16 Accurate Determination of Conformational Transitions in Oligomeric Membrane Proteins Sanz-Hernández, Máximo Vostrikov, Vitaly V. Veglia, Gianluigi De Simone, Alfonso Sci Rep Article The structural dynamics governing collective motions in oligomeric membrane proteins play key roles in vital biomolecular processes at cellular membranes. In this study, we present a structural refinement approach that combines solid-state NMR experiments and molecular simulations to accurately describe concerted conformational transitions identifying the overall structural, dynamical, and topological states of oligomeric membrane proteins. The accuracy of the structural ensembles generated with this method is shown to reach the statistical error limit, and is further demonstrated by correctly reproducing orthogonal NMR data. We demonstrate the accuracy of this approach by characterising the pentameric state of phospholamban, a key player in the regulation of calcium uptake in the sarcoplasmic reticulum, and by probing its dynamical activation upon phosphorylation. Our results underline the importance of using an ensemble approach to characterise the conformational transitions that are often responsible for the biological function of oligomeric membrane protein states. Nature Publishing Group 2016-03-15 /pmc/articles/PMC4791661/ /pubmed/26975211 http://dx.doi.org/10.1038/srep23063 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Sanz-Hernández, Máximo Vostrikov, Vitaly V. Veglia, Gianluigi De Simone, Alfonso Accurate Determination of Conformational Transitions in Oligomeric Membrane Proteins |
title | Accurate Determination of Conformational Transitions in Oligomeric Membrane Proteins |
title_full | Accurate Determination of Conformational Transitions in Oligomeric Membrane Proteins |
title_fullStr | Accurate Determination of Conformational Transitions in Oligomeric Membrane Proteins |
title_full_unstemmed | Accurate Determination of Conformational Transitions in Oligomeric Membrane Proteins |
title_short | Accurate Determination of Conformational Transitions in Oligomeric Membrane Proteins |
title_sort | accurate determination of conformational transitions in oligomeric membrane proteins |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791661/ https://www.ncbi.nlm.nih.gov/pubmed/26975211 http://dx.doi.org/10.1038/srep23063 |
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