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Diversity of arsenite oxidase gene and arsenotrophic bacteria in arsenic affected Bangladesh soils
Arsenic (As) contaminated soils are enriched with arsenotrophic bacteria. The present study analyzes the microbiome and arsenotrophic genes-from As affected soil samples of Bhanga, Charvadrason and Sadarpur of Faridpur district in Bangladesh in summer (SFDSL1, 2, 3) and in winter (WFDSL1, 2, 3). Tot...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer Berlin Heidelberg
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4792827/ https://www.ncbi.nlm.nih.gov/pubmed/26980601 http://dx.doi.org/10.1186/s13568-016-0193-0 |
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author | Sanyal, Santonu Kumar Mou, Taslin Jahan Chakrabarty, Ram Prosad Hoque, Sirajul Hossain, M. Anwar Sultana, Munawar |
author_facet | Sanyal, Santonu Kumar Mou, Taslin Jahan Chakrabarty, Ram Prosad Hoque, Sirajul Hossain, M. Anwar Sultana, Munawar |
author_sort | Sanyal, Santonu Kumar |
collection | PubMed |
description | Arsenic (As) contaminated soils are enriched with arsenotrophic bacteria. The present study analyzes the microbiome and arsenotrophic genes-from As affected soil samples of Bhanga, Charvadrason and Sadarpur of Faridpur district in Bangladesh in summer (SFDSL1, 2, 3) and in winter (WFDSL1, 2, 3). Total As content of the soils was within the range of 3.24–17.8 mg/kg as per atomic absorption spectroscopy. The aioA gene, conferring arsenite [As (III)] oxidation, was retrieved from the soil sample, WFDSL-2, reported with As concentration of 4.9 mg/kg. Phylogenetic analysis revealed that the aioA genes of soil WFDSL-2 were distributed among four major phylogenetic lineages comprised of α, β, γ Proteobacteria and Archaea with a dominance of β Proteobacteria (56.67 %). An attempt to enrich As (III) metabolizing bacteria resulted 53 isolates. ARDRA (amplified ribosomal DNA restriction analysis) followed by 16S rRNA gene sequencing of the 53 soil isolates revealed that they belong to six genera; Pseudomonas spp., Bacillus spp., Brevibacillus spp., Delftia spp., Wohlfahrtiimonas spp. and Dietzia spp. From five different genera, isolates Delftia sp. A2i, Pseudomonas sp. A3i, W. chitiniclastica H3f, Dietzia sp. H2f, Bacillus sp. H2k contained arsB gene and showed arsenite tolerance up-to 27 mM. Phenotypic As (III) oxidation potential was also confirmed with the isolates of each genus and isolate Brevibacillus sp. A1a showed significant As (III) transforming potential of 0.2425 mM per hour. The genetic information of bacterial arsenotrophy and arsenite oxidation added scientific information about the possible bioremediation potential of the soil isolates in Bangladesh. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13568-016-0193-0) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4792827 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-47928272016-04-09 Diversity of arsenite oxidase gene and arsenotrophic bacteria in arsenic affected Bangladesh soils Sanyal, Santonu Kumar Mou, Taslin Jahan Chakrabarty, Ram Prosad Hoque, Sirajul Hossain, M. Anwar Sultana, Munawar AMB Express Original Article Arsenic (As) contaminated soils are enriched with arsenotrophic bacteria. The present study analyzes the microbiome and arsenotrophic genes-from As affected soil samples of Bhanga, Charvadrason and Sadarpur of Faridpur district in Bangladesh in summer (SFDSL1, 2, 3) and in winter (WFDSL1, 2, 3). Total As content of the soils was within the range of 3.24–17.8 mg/kg as per atomic absorption spectroscopy. The aioA gene, conferring arsenite [As (III)] oxidation, was retrieved from the soil sample, WFDSL-2, reported with As concentration of 4.9 mg/kg. Phylogenetic analysis revealed that the aioA genes of soil WFDSL-2 were distributed among four major phylogenetic lineages comprised of α, β, γ Proteobacteria and Archaea with a dominance of β Proteobacteria (56.67 %). An attempt to enrich As (III) metabolizing bacteria resulted 53 isolates. ARDRA (amplified ribosomal DNA restriction analysis) followed by 16S rRNA gene sequencing of the 53 soil isolates revealed that they belong to six genera; Pseudomonas spp., Bacillus spp., Brevibacillus spp., Delftia spp., Wohlfahrtiimonas spp. and Dietzia spp. From five different genera, isolates Delftia sp. A2i, Pseudomonas sp. A3i, W. chitiniclastica H3f, Dietzia sp. H2f, Bacillus sp. H2k contained arsB gene and showed arsenite tolerance up-to 27 mM. Phenotypic As (III) oxidation potential was also confirmed with the isolates of each genus and isolate Brevibacillus sp. A1a showed significant As (III) transforming potential of 0.2425 mM per hour. The genetic information of bacterial arsenotrophy and arsenite oxidation added scientific information about the possible bioremediation potential of the soil isolates in Bangladesh. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13568-016-0193-0) contains supplementary material, which is available to authorized users. Springer Berlin Heidelberg 2016-03-15 /pmc/articles/PMC4792827/ /pubmed/26980601 http://dx.doi.org/10.1186/s13568-016-0193-0 Text en © Sanyal et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Article Sanyal, Santonu Kumar Mou, Taslin Jahan Chakrabarty, Ram Prosad Hoque, Sirajul Hossain, M. Anwar Sultana, Munawar Diversity of arsenite oxidase gene and arsenotrophic bacteria in arsenic affected Bangladesh soils |
title | Diversity of arsenite oxidase gene and arsenotrophic bacteria in arsenic affected Bangladesh soils |
title_full | Diversity of arsenite oxidase gene and arsenotrophic bacteria in arsenic affected Bangladesh soils |
title_fullStr | Diversity of arsenite oxidase gene and arsenotrophic bacteria in arsenic affected Bangladesh soils |
title_full_unstemmed | Diversity of arsenite oxidase gene and arsenotrophic bacteria in arsenic affected Bangladesh soils |
title_short | Diversity of arsenite oxidase gene and arsenotrophic bacteria in arsenic affected Bangladesh soils |
title_sort | diversity of arsenite oxidase gene and arsenotrophic bacteria in arsenic affected bangladesh soils |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4792827/ https://www.ncbi.nlm.nih.gov/pubmed/26980601 http://dx.doi.org/10.1186/s13568-016-0193-0 |
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