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Micro-computed tomography scan and virtual histological slide data for the land planarian Obama otavioi (Platyhelminthes)

BACKGROUND: We investigated whether images obtained through X-ray micro-computed tomography (μCT) can be used in conjunction with traditional methods for morphological studies of soft-bodied land planarians. μCT is non-invasive and provides true-to-scale three-dimensional imagery at high resolution....

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Autores principales: Carbayo, Fernando, Lenihan, Jennifer Winifred
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4793757/
https://www.ncbi.nlm.nih.gov/pubmed/26985364
http://dx.doi.org/10.1186/s13742-016-0119-4
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author Carbayo, Fernando
Lenihan, Jennifer Winifred
author_facet Carbayo, Fernando
Lenihan, Jennifer Winifred
author_sort Carbayo, Fernando
collection PubMed
description BACKGROUND: We investigated whether images obtained through X-ray micro-computed tomography (μCT) can be used in conjunction with traditional methods for morphological studies of soft-bodied land planarians. μCT is non-invasive and provides true-to-scale three-dimensional imagery at high resolution. We compared μCT-based images of a recently described land planarian species of Obama otavioi (Platyhelminthes) with those obtained from light microphotography of histological sections, most of which were also digitized at high magnification. FINDINGS: The specimens studied were collected in 2012. Subsequent μCT-based images of the stained body of a paratype show nearly all morphological features provided by traditional histology, with the exception of particularly minute structures, smaller than 5 μm, such as the sensory pits and single muscle fibers, which are best visible on traditional histological sections. Because the technique is non-destructive, the scanned specimen is preserved without damage. The raw and derivative μCT data and virtual histological sections are freely available in GigaDB. CONCLUSIONS: The μCT datasets of these stained soft-bodied organisms reveal images of external and internal structures that support previous taxonomic studies. This technique can be particularly important for non-destructively revealing internal details of whole museum specimens at a faster rate than histology alone. High-resolution virtual histological slides also allow further searches for new, previously unstudied morphological features. The use of X-ray equipment with higher resolution can enable smaller sensory organ and muscle fiber details to be seen. The image sets, μCT-based images and digitized histological slides can be disseminated without the constraints of specimen loans.
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spelling pubmed-47937572016-03-17 Micro-computed tomography scan and virtual histological slide data for the land planarian Obama otavioi (Platyhelminthes) Carbayo, Fernando Lenihan, Jennifer Winifred Gigascience Data Note BACKGROUND: We investigated whether images obtained through X-ray micro-computed tomography (μCT) can be used in conjunction with traditional methods for morphological studies of soft-bodied land planarians. μCT is non-invasive and provides true-to-scale three-dimensional imagery at high resolution. We compared μCT-based images of a recently described land planarian species of Obama otavioi (Platyhelminthes) with those obtained from light microphotography of histological sections, most of which were also digitized at high magnification. FINDINGS: The specimens studied were collected in 2012. Subsequent μCT-based images of the stained body of a paratype show nearly all morphological features provided by traditional histology, with the exception of particularly minute structures, smaller than 5 μm, such as the sensory pits and single muscle fibers, which are best visible on traditional histological sections. Because the technique is non-destructive, the scanned specimen is preserved without damage. The raw and derivative μCT data and virtual histological sections are freely available in GigaDB. CONCLUSIONS: The μCT datasets of these stained soft-bodied organisms reveal images of external and internal structures that support previous taxonomic studies. This technique can be particularly important for non-destructively revealing internal details of whole museum specimens at a faster rate than histology alone. High-resolution virtual histological slides also allow further searches for new, previously unstudied morphological features. The use of X-ray equipment with higher resolution can enable smaller sensory organ and muscle fiber details to be seen. The image sets, μCT-based images and digitized histological slides can be disseminated without the constraints of specimen loans. BioMed Central 2016-03-16 /pmc/articles/PMC4793757/ /pubmed/26985364 http://dx.doi.org/10.1186/s13742-016-0119-4 Text en © Carbayo and Lenihan. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Data Note
Carbayo, Fernando
Lenihan, Jennifer Winifred
Micro-computed tomography scan and virtual histological slide data for the land planarian Obama otavioi (Platyhelminthes)
title Micro-computed tomography scan and virtual histological slide data for the land planarian Obama otavioi (Platyhelminthes)
title_full Micro-computed tomography scan and virtual histological slide data for the land planarian Obama otavioi (Platyhelminthes)
title_fullStr Micro-computed tomography scan and virtual histological slide data for the land planarian Obama otavioi (Platyhelminthes)
title_full_unstemmed Micro-computed tomography scan and virtual histological slide data for the land planarian Obama otavioi (Platyhelminthes)
title_short Micro-computed tomography scan and virtual histological slide data for the land planarian Obama otavioi (Platyhelminthes)
title_sort micro-computed tomography scan and virtual histological slide data for the land planarian obama otavioi (platyhelminthes)
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4793757/
https://www.ncbi.nlm.nih.gov/pubmed/26985364
http://dx.doi.org/10.1186/s13742-016-0119-4
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