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Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages

A suitable reference gene is an important prerequisite for guarantying accurate and reliable results in qPCR analysis. Celery is one of the representative vegetable in Apiaceae and is widely cultivated and consumed in the world. However, no reports have been previously published concerning reference...

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Autores principales: Li, Meng-Yao, Wang, Feng, Jiang, Qian, Wang, Guan-Long, Tian, Chang, Xiong, Ai-Sheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4794502/
https://www.ncbi.nlm.nih.gov/pubmed/27014330
http://dx.doi.org/10.3389/fpls.2016.00313
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author Li, Meng-Yao
Wang, Feng
Jiang, Qian
Wang, Guan-Long
Tian, Chang
Xiong, Ai-Sheng
author_facet Li, Meng-Yao
Wang, Feng
Jiang, Qian
Wang, Guan-Long
Tian, Chang
Xiong, Ai-Sheng
author_sort Li, Meng-Yao
collection PubMed
description A suitable reference gene is an important prerequisite for guarantying accurate and reliable results in qPCR analysis. Celery is one of the representative vegetable in Apiaceae and is widely cultivated and consumed in the world. However, no reports have been previously published concerning reference genes in celery. In this study, the expression stabilities of nine candidate reference genes in leaf blade and petiole at different development stages were evaluated using three statistics algorithms geNorm, NormFinder, and BestKeeper. Our results showed that TUB-B, TUB-A, and UBC were the most reference genes among all tested samples. GAPDH represented the maximum stability for most individual sample, while the UBQ displayed the minimum stability. To further validate the stability of reference genes, the expression pattern of AgAP2-2 was calculated by using the selected genes for normalization. In addition, the expression patterns of several development-related genes were studied using the selected reference gene. Our results will be beneficial for further studies on gene transcription in celery.
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spelling pubmed-47945022016-03-24 Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages Li, Meng-Yao Wang, Feng Jiang, Qian Wang, Guan-Long Tian, Chang Xiong, Ai-Sheng Front Plant Sci Plant Science A suitable reference gene is an important prerequisite for guarantying accurate and reliable results in qPCR analysis. Celery is one of the representative vegetable in Apiaceae and is widely cultivated and consumed in the world. However, no reports have been previously published concerning reference genes in celery. In this study, the expression stabilities of nine candidate reference genes in leaf blade and petiole at different development stages were evaluated using three statistics algorithms geNorm, NormFinder, and BestKeeper. Our results showed that TUB-B, TUB-A, and UBC were the most reference genes among all tested samples. GAPDH represented the maximum stability for most individual sample, while the UBQ displayed the minimum stability. To further validate the stability of reference genes, the expression pattern of AgAP2-2 was calculated by using the selected genes for normalization. In addition, the expression patterns of several development-related genes were studied using the selected reference gene. Our results will be beneficial for further studies on gene transcription in celery. Frontiers Media S.A. 2016-03-17 /pmc/articles/PMC4794502/ /pubmed/27014330 http://dx.doi.org/10.3389/fpls.2016.00313 Text en Copyright © 2016 Li, Wang, Jiang, Wang, Tian and Xiong. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Li, Meng-Yao
Wang, Feng
Jiang, Qian
Wang, Guan-Long
Tian, Chang
Xiong, Ai-Sheng
Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages
title Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages
title_full Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages
title_fullStr Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages
title_full_unstemmed Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages
title_short Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages
title_sort validation and comparison of reference genes for qpcr normalization of celery (apium graveolens) at different development stages
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4794502/
https://www.ncbi.nlm.nih.gov/pubmed/27014330
http://dx.doi.org/10.3389/fpls.2016.00313
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