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Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages
A suitable reference gene is an important prerequisite for guarantying accurate and reliable results in qPCR analysis. Celery is one of the representative vegetable in Apiaceae and is widely cultivated and consumed in the world. However, no reports have been previously published concerning reference...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4794502/ https://www.ncbi.nlm.nih.gov/pubmed/27014330 http://dx.doi.org/10.3389/fpls.2016.00313 |
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author | Li, Meng-Yao Wang, Feng Jiang, Qian Wang, Guan-Long Tian, Chang Xiong, Ai-Sheng |
author_facet | Li, Meng-Yao Wang, Feng Jiang, Qian Wang, Guan-Long Tian, Chang Xiong, Ai-Sheng |
author_sort | Li, Meng-Yao |
collection | PubMed |
description | A suitable reference gene is an important prerequisite for guarantying accurate and reliable results in qPCR analysis. Celery is one of the representative vegetable in Apiaceae and is widely cultivated and consumed in the world. However, no reports have been previously published concerning reference genes in celery. In this study, the expression stabilities of nine candidate reference genes in leaf blade and petiole at different development stages were evaluated using three statistics algorithms geNorm, NormFinder, and BestKeeper. Our results showed that TUB-B, TUB-A, and UBC were the most reference genes among all tested samples. GAPDH represented the maximum stability for most individual sample, while the UBQ displayed the minimum stability. To further validate the stability of reference genes, the expression pattern of AgAP2-2 was calculated by using the selected genes for normalization. In addition, the expression patterns of several development-related genes were studied using the selected reference gene. Our results will be beneficial for further studies on gene transcription in celery. |
format | Online Article Text |
id | pubmed-4794502 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-47945022016-03-24 Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages Li, Meng-Yao Wang, Feng Jiang, Qian Wang, Guan-Long Tian, Chang Xiong, Ai-Sheng Front Plant Sci Plant Science A suitable reference gene is an important prerequisite for guarantying accurate and reliable results in qPCR analysis. Celery is one of the representative vegetable in Apiaceae and is widely cultivated and consumed in the world. However, no reports have been previously published concerning reference genes in celery. In this study, the expression stabilities of nine candidate reference genes in leaf blade and petiole at different development stages were evaluated using three statistics algorithms geNorm, NormFinder, and BestKeeper. Our results showed that TUB-B, TUB-A, and UBC were the most reference genes among all tested samples. GAPDH represented the maximum stability for most individual sample, while the UBQ displayed the minimum stability. To further validate the stability of reference genes, the expression pattern of AgAP2-2 was calculated by using the selected genes for normalization. In addition, the expression patterns of several development-related genes were studied using the selected reference gene. Our results will be beneficial for further studies on gene transcription in celery. Frontiers Media S.A. 2016-03-17 /pmc/articles/PMC4794502/ /pubmed/27014330 http://dx.doi.org/10.3389/fpls.2016.00313 Text en Copyright © 2016 Li, Wang, Jiang, Wang, Tian and Xiong. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Li, Meng-Yao Wang, Feng Jiang, Qian Wang, Guan-Long Tian, Chang Xiong, Ai-Sheng Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages |
title | Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages |
title_full | Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages |
title_fullStr | Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages |
title_full_unstemmed | Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages |
title_short | Validation and Comparison of Reference Genes for qPCR Normalization of Celery (Apium graveolens) at Different Development Stages |
title_sort | validation and comparison of reference genes for qpcr normalization of celery (apium graveolens) at different development stages |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4794502/ https://www.ncbi.nlm.nih.gov/pubmed/27014330 http://dx.doi.org/10.3389/fpls.2016.00313 |
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