Cargando…
MTDH genetic variants in colorectal cancer patients
The colorectal carcinogenesis is a complex process encompassing genetic alterations. The oncoprotein AEG-1, encoded by the MTDH gene, was shown previously to be involved in colorectal cancer (CRC). The aim of this study was to determine the frequency and the spectrum of MTDH variants in tumor tissue...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4794727/ https://www.ncbi.nlm.nih.gov/pubmed/26983693 http://dx.doi.org/10.1038/srep23163 |
_version_ | 1782421510692012032 |
---|---|
author | Gnosa, Sebastian Ticha, Ivana Haapaniemi, Staffan Sun, Xiao-Feng |
author_facet | Gnosa, Sebastian Ticha, Ivana Haapaniemi, Staffan Sun, Xiao-Feng |
author_sort | Gnosa, Sebastian |
collection | PubMed |
description | The colorectal carcinogenesis is a complex process encompassing genetic alterations. The oncoprotein AEG-1, encoded by the MTDH gene, was shown previously to be involved in colorectal cancer (CRC). The aim of this study was to determine the frequency and the spectrum of MTDH variants in tumor tissue, and their relationship to clinicopathological variables in CRC patients. The study included tumors from 356 unselected CRC patients. Mutation analysis of the MTDH gene, including coding region and adjacent intronic sequences, was performed by direct DNA sequencing. The corresponding normal colorectal tissue was analyzed in the carriers of exonic variant to confirm germline or somatic origin. We detected 42 intronic variants, where 25 were novel. Furthermore, we found 8 exonic variants of which four, one missense (c.977C > G-germline) and three frameshift mutations (c.533delA-somatic, c.1340dupA-unknown origin, c.1731delA-unknown origin), were novel. In silico prediction analyses suggested four deleterious variants (c.232G > T, c.533delA, c.1340dupA, and c.1731delA). There were no correlations between the MTDH variants and tumor stage, differentiation or patient survival. We described several novel exonic and intronic variants of the MTDH gene. The detection of likely pathogenic truncating mutations and alterations in functional protein domains indicate their clinical significance, although none of the variants had prognostic potential. |
format | Online Article Text |
id | pubmed-4794727 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-47947272016-03-18 MTDH genetic variants in colorectal cancer patients Gnosa, Sebastian Ticha, Ivana Haapaniemi, Staffan Sun, Xiao-Feng Sci Rep Article The colorectal carcinogenesis is a complex process encompassing genetic alterations. The oncoprotein AEG-1, encoded by the MTDH gene, was shown previously to be involved in colorectal cancer (CRC). The aim of this study was to determine the frequency and the spectrum of MTDH variants in tumor tissue, and their relationship to clinicopathological variables in CRC patients. The study included tumors from 356 unselected CRC patients. Mutation analysis of the MTDH gene, including coding region and adjacent intronic sequences, was performed by direct DNA sequencing. The corresponding normal colorectal tissue was analyzed in the carriers of exonic variant to confirm germline or somatic origin. We detected 42 intronic variants, where 25 were novel. Furthermore, we found 8 exonic variants of which four, one missense (c.977C > G-germline) and three frameshift mutations (c.533delA-somatic, c.1340dupA-unknown origin, c.1731delA-unknown origin), were novel. In silico prediction analyses suggested four deleterious variants (c.232G > T, c.533delA, c.1340dupA, and c.1731delA). There were no correlations between the MTDH variants and tumor stage, differentiation or patient survival. We described several novel exonic and intronic variants of the MTDH gene. The detection of likely pathogenic truncating mutations and alterations in functional protein domains indicate their clinical significance, although none of the variants had prognostic potential. Nature Publishing Group 2016-03-17 /pmc/articles/PMC4794727/ /pubmed/26983693 http://dx.doi.org/10.1038/srep23163 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Gnosa, Sebastian Ticha, Ivana Haapaniemi, Staffan Sun, Xiao-Feng MTDH genetic variants in colorectal cancer patients |
title | MTDH genetic variants in colorectal cancer patients |
title_full | MTDH genetic variants in colorectal cancer patients |
title_fullStr | MTDH genetic variants in colorectal cancer patients |
title_full_unstemmed | MTDH genetic variants in colorectal cancer patients |
title_short | MTDH genetic variants in colorectal cancer patients |
title_sort | mtdh genetic variants in colorectal cancer patients |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4794727/ https://www.ncbi.nlm.nih.gov/pubmed/26983693 http://dx.doi.org/10.1038/srep23163 |
work_keys_str_mv | AT gnosasebastian mtdhgeneticvariantsincolorectalcancerpatients AT tichaivana mtdhgeneticvariantsincolorectalcancerpatients AT haapaniemistaffan mtdhgeneticvariantsincolorectalcancerpatients AT sunxiaofeng mtdhgeneticvariantsincolorectalcancerpatients |