Cargando…

Machine learning to assist risk-of-bias assessments in systematic reviews

Background: Risk-of-bias assessments are now a standard component of systematic reviews. At present, reviewers need to manually identify relevant parts of research articles for a set of methodological elements that affect the risk of bias, in order to make a risk-of-bias judgement for each of these...

Descripción completa

Detalles Bibliográficos
Autores principales: Millard, Louise AC, Flach, Peter A, Higgins, Julian PT
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4795562/
https://www.ncbi.nlm.nih.gov/pubmed/26659355
http://dx.doi.org/10.1093/ije/dyv306
_version_ 1782421622119989248
author Millard, Louise AC
Flach, Peter A
Higgins, Julian PT
author_facet Millard, Louise AC
Flach, Peter A
Higgins, Julian PT
author_sort Millard, Louise AC
collection PubMed
description Background: Risk-of-bias assessments are now a standard component of systematic reviews. At present, reviewers need to manually identify relevant parts of research articles for a set of methodological elements that affect the risk of bias, in order to make a risk-of-bias judgement for each of these elements. We investigate the use of text mining methods to automate risk-of-bias assessments in systematic reviews. We aim to identify relevant sentences within the text of included articles, to rank articles by risk of bias and to reduce the number of risk-of-bias assessments that the reviewers need to perform by hand. Methods: We use supervised machine learning to train two types of models, for each of the three risk-of-bias properties of sequence generation, allocation concealment and blinding. The first model predicts whether a sentence in a research article contains relevant information. The second model predicts a risk-of-bias value for each research article. We use logistic regression, where each independent variable is the frequency of a word in a sentence or article, respectively. Results: We found that sentences can be successfully ranked by relevance with area under the receiver operating characteristic (ROC) curve (AUC) > 0.98. Articles can be ranked by risk of bias with AUC > 0.72. We estimate that more than 33% of articles can be assessed by just one reviewer, where two reviewers are normally required. Conclusions: We show that text mining can be used to assist risk-of-bias assessments.
format Online
Article
Text
id pubmed-4795562
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-47955622016-03-21 Machine learning to assist risk-of-bias assessments in systematic reviews Millard, Louise AC Flach, Peter A Higgins, Julian PT Int J Epidemiol Knowledge Generation Background: Risk-of-bias assessments are now a standard component of systematic reviews. At present, reviewers need to manually identify relevant parts of research articles for a set of methodological elements that affect the risk of bias, in order to make a risk-of-bias judgement for each of these elements. We investigate the use of text mining methods to automate risk-of-bias assessments in systematic reviews. We aim to identify relevant sentences within the text of included articles, to rank articles by risk of bias and to reduce the number of risk-of-bias assessments that the reviewers need to perform by hand. Methods: We use supervised machine learning to train two types of models, for each of the three risk-of-bias properties of sequence generation, allocation concealment and blinding. The first model predicts whether a sentence in a research article contains relevant information. The second model predicts a risk-of-bias value for each research article. We use logistic regression, where each independent variable is the frequency of a word in a sentence or article, respectively. Results: We found that sentences can be successfully ranked by relevance with area under the receiver operating characteristic (ROC) curve (AUC) > 0.98. Articles can be ranked by risk of bias with AUC > 0.72. We estimate that more than 33% of articles can be assessed by just one reviewer, where two reviewers are normally required. Conclusions: We show that text mining can be used to assist risk-of-bias assessments. Oxford University Press 2016-02 2015-12-08 /pmc/articles/PMC4795562/ /pubmed/26659355 http://dx.doi.org/10.1093/ije/dyv306 Text en © The Author 2015. Published by Oxford University Press on behalf of the International Epidemiological Association http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/ ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Knowledge Generation
Millard, Louise AC
Flach, Peter A
Higgins, Julian PT
Machine learning to assist risk-of-bias assessments in systematic reviews
title Machine learning to assist risk-of-bias assessments in systematic reviews
title_full Machine learning to assist risk-of-bias assessments in systematic reviews
title_fullStr Machine learning to assist risk-of-bias assessments in systematic reviews
title_full_unstemmed Machine learning to assist risk-of-bias assessments in systematic reviews
title_short Machine learning to assist risk-of-bias assessments in systematic reviews
title_sort machine learning to assist risk-of-bias assessments in systematic reviews
topic Knowledge Generation
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4795562/
https://www.ncbi.nlm.nih.gov/pubmed/26659355
http://dx.doi.org/10.1093/ije/dyv306
work_keys_str_mv AT millardlouiseac machinelearningtoassistriskofbiasassessmentsinsystematicreviews
AT flachpetera machinelearningtoassistriskofbiasassessmentsinsystematicreviews
AT higginsjulianpt machinelearningtoassistriskofbiasassessmentsinsystematicreviews