Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica

Here, we report the draft genome sequence of Rhodotorula sp. strain JG1b, a yeast that was isolated from ice-cemented permafrost in the upper-elevation McMurdo Dry Valleys, Antarctica. The sequenced genome size is 19.39 Mb, consisting of 156 scaffolds and containing a total of 5,625 predicted genes....

Descripción completa

Detalles Bibliográficos
Autores principales: Goordial, Jacqueline, Raymond-Bouchard, Isabelle, Riley, Robert, Ronholm, Jennifer, Shapiro, Nicole, Woyke, Tanja, LaButti, Kurt M., Tice, Hope, Amirebrahimi, Mojgan, Grigoriev, Igor V., Greer, Charles, Bakermans, Corien, Whyte, Lyle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2016
Materias:
Eukaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4796114/
https://www.ncbi.nlm.nih.gov/pubmed/26988035
http://dx.doi.org/10.1128/genomeA.00069-16
_version_ 1782421714607538176
author Goordial, Jacqueline
Raymond-Bouchard, Isabelle
Riley, Robert
Ronholm, Jennifer
Shapiro, Nicole
Woyke, Tanja
LaButti, Kurt M.
Tice, Hope
Amirebrahimi, Mojgan
Grigoriev, Igor V.
Greer, Charles
Bakermans, Corien
Whyte, Lyle
author_facet Goordial, Jacqueline
Raymond-Bouchard, Isabelle
Riley, Robert
Ronholm, Jennifer
Shapiro, Nicole
Woyke, Tanja
LaButti, Kurt M.
Tice, Hope
Amirebrahimi, Mojgan
Grigoriev, Igor V.
Greer, Charles
Bakermans, Corien
Whyte, Lyle
author_sort Goordial, Jacqueline
collection PubMed
description Here, we report the draft genome sequence of Rhodotorula sp. strain JG1b, a yeast that was isolated from ice-cemented permafrost in the upper-elevation McMurdo Dry Valleys, Antarctica. The sequenced genome size is 19.39 Mb, consisting of 156 scaffolds and containing a total of 5,625 predicted genes. This is the first known cold-adapted Rhodotorula sp. sequenced to date.
format Online
Article
Text
id pubmed-4796114
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-47961142016-03-22 Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica Goordial, Jacqueline Raymond-Bouchard, Isabelle Riley, Robert Ronholm, Jennifer Shapiro, Nicole Woyke, Tanja LaButti, Kurt M. Tice, Hope Amirebrahimi, Mojgan Grigoriev, Igor V. Greer, Charles Bakermans, Corien Whyte, Lyle Genome Announc Eukaryotes Here, we report the draft genome sequence of Rhodotorula sp. strain JG1b, a yeast that was isolated from ice-cemented permafrost in the upper-elevation McMurdo Dry Valleys, Antarctica. The sequenced genome size is 19.39 Mb, consisting of 156 scaffolds and containing a total of 5,625 predicted genes. This is the first known cold-adapted Rhodotorula sp. sequenced to date. American Society for Microbiology 2016-03-17 /pmc/articles/PMC4796114/ /pubmed/26988035 http://dx.doi.org/10.1128/genomeA.00069-16 Text en Copyright © 2016 Goordial et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) .
spellingShingle Eukaryotes
Goordial, Jacqueline
Raymond-Bouchard, Isabelle
Riley, Robert
Ronholm, Jennifer
Shapiro, Nicole
Woyke, Tanja
LaButti, Kurt M.
Tice, Hope
Amirebrahimi, Mojgan
Grigoriev, Igor V.
Greer, Charles
Bakermans, Corien
Whyte, Lyle
Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
title Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
title_full Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
title_fullStr Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
title_full_unstemmed Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
title_short Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
title_sort improved high-quality draft genome sequence of the eurypsychrophile rhodotorula sp. jg1b, isolated from permafrost in the hyperarid upper-elevation mcmurdo dry valleys, antarctica
topic Eukaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4796114/
https://www.ncbi.nlm.nih.gov/pubmed/26988035
http://dx.doi.org/10.1128/genomeA.00069-16
work_keys_str_mv AT goordialjacqueline improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT raymondbouchardisabelle improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT rileyrobert improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT ronholmjennifer improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT shapironicole improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT woyketanja improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT labuttikurtm improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT ticehope improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT amirebrahimimojgan improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT grigorievigorv improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT greercharles improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT bakermanscorien improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica
AT whytelyle improvedhighqualitydraftgenomesequenceoftheeurypsychrophilerhodotorulaspjg1bisolatedfrompermafrostinthehyperaridupperelevationmcmurdodryvalleysantarctica

Ejemplares similares