Cargando…

Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors

Bacterial genomes are transcribed by DNA-dependent RNA polymerase (RNAP), which achieves gene selectivity through interaction with sigma factors that recognize promoters, and transcription factors (TFs) that control the activity and specificity of RNAP holoenzyme. To understand the molecular mechani...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ishihama, Akira, Shimada, Tomohiro, Yamazaki, Yukiko
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Data Resources and Analyses
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4797297/ https://www.ncbi.nlm.nih.gov/pubmed/26843427 http://dx.doi.org/10.1093/nar/gkw051

Ejemplares similares

Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo
por: Gao, Ye, et al.
Publicado: (2021)

Expanded roles of leucine-responsive regulatory protein in transcription regulation of the Escherichia coli genome: Genomic SELEX screening of the regulation targets
por: Shimada, Tomohiro, et al.
Publicado: (2015)

The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets
por: Gao, Ye, et al.
Publicado: (2023)

Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome
por: Hwang, Soonkyu, et al.
Publicado: (2019)

Limits to a classic paradigm: most transcription factors in E. coli regulate genes involved in multiple biological processes
por: Ledezma-Tejeida, Daniela, et al.
Publicado: (2019)

A multi-scale expression and regulation knowledge base for Escherichia coli
por: Lamoureux, Cameron R, et al.
Publicado: (2023)

Integrative FourD omics approach profiles the target network of the carbon storage regulatory system
por: Sowa, Steven W., et al.
Publicado: (2017)

Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues
por: Reyes, Alejandro, et al.
Publicado: (2018)

Predictive models of eukaryotic transcriptional regulation reveals changes in transcription factor roles and promoter usage between metabolic conditions
por: Holland, Petter, et al.
Publicado: (2019)

Global landscape of mouse and human cytokine transcriptional regulation
por: Carrasco Pro, Sebastian, et al.
Publicado: (2018)

Epigenetic program and transcription factor circuitry of dendritic cell development
por: Lin, Qiong, et al.
Publicado: (2015)

Waves of sumoylation support transcription dynamics during adipocyte differentiation
por: Zhao, Xu, et al.
Publicado: (2022)

Regulation of both transcription and RNA turnover contribute to germline specification
por: Tan, Kun, et al.
Publicado: (2022)

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing
por: Zhang, Runxuan, et al.
Publicado: (2017)

Interaction of the NRF2 and p63 transcription factors promotes keratinocyte proliferation in the epidermis
por: Kurinna, Svitlana, et al.
Publicado: (2021)

HSFs drive transcription of distinct genes and enhancers during oxidative stress and heat shock
por: Himanen, Samu V, et al.
Publicado: (2022)

LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations
por: Li, Yongsheng, et al.
Publicado: (2018)

Dynamically and epigenetically coordinated GATA/ETS/SOX transcription factor expression is indispensable for endothelial cell differentiation
por: Kanki, Yasuharu, et al.
Publicado: (2017)

Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities
por: Müller-Dott, Sophia, et al.
Publicado: (2023)

Transposable element sequence fragments incorporated into coding and noncoding transcripts modulate the transcriptome of human pluripotent stem cells
por: Babarinde, Isaac A, et al.
Publicado: (2021)

Deciphering human ribonucleoprotein regulatory networks
por: Mukherjee, Neelanjan, et al.
Publicado: (2019)

ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast
por: Mondeel, Thierry D G A, et al.
Publicado: (2019)

Trypanosoma brucei histones are heavily modified with combinatorial post-translational modifications and mark Pol II transcription start regions with hyperacetylated H2A
por: Maree, Johannes P, et al.
Publicado: (2022)

Integration of TP53, DREAM, MMB-FOXM1 and RB-E2F target gene analyses identifies cell cycle gene regulatory networks
por: Fischer, Martin, et al.
Publicado: (2016)

Cis-regulatory landscapes of four cell types of the retina
por: Hartl, Dominik, et al.
Publicado: (2017)

Comprehensive mapping of the human cytokine gene regulatory network
por: Santoso, Clarissa S, et al.
Publicado: (2020)

Single-target regulators form a minor group of transcription factors in Escherichia coli K-12
por: Shimada, Tomohiro, et al.
Publicado: (2018)

The regulatory landscape of multiple brain regions in outbred heterogeneous stock rats
por: Munro, Daniel, et al.
Publicado: (2022)

Specific enhancer selection by IRF3, IRF5 and IRF9 is determined by ISRE half-sites, 5′ and 3′ flanking bases, collaborating transcription factors and the chromatin environment in a combinatorial fashion
por: Csumita, Mária, et al.
Publicado: (2020)

Computational resources to define alleles and altered regulatory motifs at genomically edited candidate response elements
por: Ehmsen, Kirk T, et al.
Publicado: (2021)

The comprehensive interactomes of human adenosine RNA methyltransferases and demethylases reveal distinct functional and regulatory features
por: Covelo-Molares, Helena, et al.
Publicado: (2021)

Systematic characterization of short intronic splicing-regulatory elements in SMN2 pre-mRNA
por: Gao, Yuan, et al.
Publicado: (2022)

Dissecting the sources of gene expression variation in a pan-cancer analysis identifies novel regulatory mutations
por: Sharma, Anchal, et al.
Publicado: (2018)

Chromatin regulatory dynamics of early human small intestinal development using a directed differentiation model
por: Hung, Yu-Han, et al.
Publicado: (2021)

Determination of the two-component systems regulatory network reveals core and accessory regulations across Pseudomonas aeruginosa lineages
por: Trouillon, Julian, et al.
Publicado: (2021)

GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data
por: Giacopuzzi, Edoardo, et al.
Publicado: (2022)

Single-Target Regulators Constitute the Minority Group of Transcription Factors in Escherichia coli K-12
por: Shimada, Tomohiro, et al.
Publicado: (2021)

Assessing the translational landscape of myogenic differentiation by ribosome profiling
por: de Klerk, Eleonora, et al.
Publicado: (2015)

Coordinated Hibernation of Transcriptional and Translational Apparatus during Growth Transition of Escherichia coli to Stationary Phase
por: Yoshida, Hideji, et al.
Publicado: (2018)

Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation
por: Dillon, Laura A. L., et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_rt1ejkcmsuic45uglr93ipel4v