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phylosignal: an R package to measure, test, and explore the phylogenetic signal

Phylogenetic signal is the tendency for closely related species to display similar trait values as a consequence of their phylogenetic proximity. Ecologists and evolutionary biologists are becoming increasingly interested in studying the phylogenetic signal and the processes which drive patterns of...

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Autores principales: Keck, François, Rimet, Frédéric, Bouchez, Agnès, Franc, Alain
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4799788/
https://www.ncbi.nlm.nih.gov/pubmed/27066252
http://dx.doi.org/10.1002/ece3.2051
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author Keck, François
Rimet, Frédéric
Bouchez, Agnès
Franc, Alain
author_facet Keck, François
Rimet, Frédéric
Bouchez, Agnès
Franc, Alain
author_sort Keck, François
collection PubMed
description Phylogenetic signal is the tendency for closely related species to display similar trait values as a consequence of their phylogenetic proximity. Ecologists and evolutionary biologists are becoming increasingly interested in studying the phylogenetic signal and the processes which drive patterns of trait values in the phylogeny. Here, we present a new R package, phylosignal which provides a collection of tools to explore the phylogenetic signal for continuous biological traits. These tools are mainly based on the concept of autocorrelation and have been first developed in the field of spatial statistics. To illustrate the use of the package, we analyze the phylogenetic signal in pollution sensitivity for 17 species of diatoms.
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spelling pubmed-47997882016-04-08 phylosignal: an R package to measure, test, and explore the phylogenetic signal Keck, François Rimet, Frédéric Bouchez, Agnès Franc, Alain Ecol Evol Original Research Phylogenetic signal is the tendency for closely related species to display similar trait values as a consequence of their phylogenetic proximity. Ecologists and evolutionary biologists are becoming increasingly interested in studying the phylogenetic signal and the processes which drive patterns of trait values in the phylogeny. Here, we present a new R package, phylosignal which provides a collection of tools to explore the phylogenetic signal for continuous biological traits. These tools are mainly based on the concept of autocorrelation and have been first developed in the field of spatial statistics. To illustrate the use of the package, we analyze the phylogenetic signal in pollution sensitivity for 17 species of diatoms. John Wiley and Sons Inc. 2016-03-19 /pmc/articles/PMC4799788/ /pubmed/27066252 http://dx.doi.org/10.1002/ece3.2051 Text en © 2016 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Keck, François
Rimet, Frédéric
Bouchez, Agnès
Franc, Alain
phylosignal: an R package to measure, test, and explore the phylogenetic signal
title phylosignal: an R package to measure, test, and explore the phylogenetic signal
title_full phylosignal: an R package to measure, test, and explore the phylogenetic signal
title_fullStr phylosignal: an R package to measure, test, and explore the phylogenetic signal
title_full_unstemmed phylosignal: an R package to measure, test, and explore the phylogenetic signal
title_short phylosignal: an R package to measure, test, and explore the phylogenetic signal
title_sort phylosignal: an r package to measure, test, and explore the phylogenetic signal
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4799788/
https://www.ncbi.nlm.nih.gov/pubmed/27066252
http://dx.doi.org/10.1002/ece3.2051
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