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Differences and Variations among Anguilla japonica, Muraenesox cinereus and Conger myriaster from the Yellow Sea

Genomic DNAs were extracted from the muscle of twenty-one specimens of three eel species collected in Anguilla japonica (AJ), Muraenesox cinereus (MC) and Conger myriaster (CM) from the Yellow Sea, respectively. In the present study, 7 oligonucleotides primers generated 191 specific loci in the AJ s...

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Autor principal: Yoon, Jong-Man
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Korean Society of Developmental Biology 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4801043/
https://www.ncbi.nlm.nih.gov/pubmed/27004273
http://dx.doi.org/10.12717/DR.2015.19.3.163
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author Yoon, Jong-Man
author_facet Yoon, Jong-Man
author_sort Yoon, Jong-Man
collection PubMed
description Genomic DNAs were extracted from the muscle of twenty-one specimens of three eel species collected in Anguilla japonica (AJ), Muraenesox cinereus (MC) and Conger myriaster (CM) from the Yellow Sea, respectively. In the present study, 7 oligonucleotides primers generated 191 specific loci in the AJ species, 226 in the (MC) species and 181 in the CM species, respectively. The primer BION-02 generated the most loci (a total of 83), with an average of 11.86 in the AJ species. The specific loci generated by oligonucleotides primers exhibited inter-individual-specific characteristics, thus revealing DNA polymorphisms. With regard to average bandsharing value (BS) results, individuals from Conger myriaster species (0.808) exhibited higher bandsharing values than did individuals from Muraenesox cinereus species (0.729) (p<0.05). The longest genetic distance (0.430) displaying significant molecular difference was also between individual no. 01 within Anguilla japonica eel species and individual no. 04 within Anguilla japonica species. In this study, the dendrogram resulted from reliable seven oligonucleotides primers, indicating three genetic clusters composed of group I (ANGUILLA 01~ANGUILLA 07), group II (MURAENESOX 08~MURAENESOX 14) and group III (CONGER 15~CONGER 21). The existence of species differentiation and DNA polymorphisms among three eel species were detected by PCR analysis. As mentioned above, a dendrogram revealed close relationships between individual identities within three eel species. High levels of a significant genetic distance among three eel species showed this PCR approach is one of the most suitable tools for individuals and/or species biological DNA studies.
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spelling pubmed-48010432016-03-21 Differences and Variations among Anguilla japonica, Muraenesox cinereus and Conger myriaster from the Yellow Sea Yoon, Jong-Man Dev Reprod Article Genomic DNAs were extracted from the muscle of twenty-one specimens of three eel species collected in Anguilla japonica (AJ), Muraenesox cinereus (MC) and Conger myriaster (CM) from the Yellow Sea, respectively. In the present study, 7 oligonucleotides primers generated 191 specific loci in the AJ species, 226 in the (MC) species and 181 in the CM species, respectively. The primer BION-02 generated the most loci (a total of 83), with an average of 11.86 in the AJ species. The specific loci generated by oligonucleotides primers exhibited inter-individual-specific characteristics, thus revealing DNA polymorphisms. With regard to average bandsharing value (BS) results, individuals from Conger myriaster species (0.808) exhibited higher bandsharing values than did individuals from Muraenesox cinereus species (0.729) (p<0.05). The longest genetic distance (0.430) displaying significant molecular difference was also between individual no. 01 within Anguilla japonica eel species and individual no. 04 within Anguilla japonica species. In this study, the dendrogram resulted from reliable seven oligonucleotides primers, indicating three genetic clusters composed of group I (ANGUILLA 01~ANGUILLA 07), group II (MURAENESOX 08~MURAENESOX 14) and group III (CONGER 15~CONGER 21). The existence of species differentiation and DNA polymorphisms among three eel species were detected by PCR analysis. As mentioned above, a dendrogram revealed close relationships between individual identities within three eel species. High levels of a significant genetic distance among three eel species showed this PCR approach is one of the most suitable tools for individuals and/or species biological DNA studies. The Korean Society of Developmental Biology 2015-09 /pmc/articles/PMC4801043/ /pubmed/27004273 http://dx.doi.org/10.12717/DR.2015.19.3.163 Text en © The Korean Society of Developmental Biology, All rights reserved http://creativecommons.org/licenses/by-nc/3.0/ This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Article
Yoon, Jong-Man
Differences and Variations among Anguilla japonica, Muraenesox cinereus and Conger myriaster from the Yellow Sea
title Differences and Variations among Anguilla japonica, Muraenesox cinereus and Conger myriaster from the Yellow Sea
title_full Differences and Variations among Anguilla japonica, Muraenesox cinereus and Conger myriaster from the Yellow Sea
title_fullStr Differences and Variations among Anguilla japonica, Muraenesox cinereus and Conger myriaster from the Yellow Sea
title_full_unstemmed Differences and Variations among Anguilla japonica, Muraenesox cinereus and Conger myriaster from the Yellow Sea
title_short Differences and Variations among Anguilla japonica, Muraenesox cinereus and Conger myriaster from the Yellow Sea
title_sort differences and variations among anguilla japonica, muraenesox cinereus and conger myriaster from the yellow sea
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4801043/
https://www.ncbi.nlm.nih.gov/pubmed/27004273
http://dx.doi.org/10.12717/DR.2015.19.3.163
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