Cargando…
Additive CHARMM force field for naturally occurring modified ribonucleotides
More than 100 naturally occurring modified nucleotides have been found in RNA molecules, in particular in tRNAs. We have determined molecular mechanics force field parameters compatible with the CHARMM36 all‐atom additive force field for all these modifications using the CHARMM force field parametri...
Autores principales: | Xu, You, Vanommeslaeghe, Kenno, Aleksandrov, Alexey, MacKerell, Alexander D., Nilsson, Lennart |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4801715/ https://www.ncbi.nlm.nih.gov/pubmed/26841080 http://dx.doi.org/10.1002/jcc.24307 |
Ejemplares similares
-
CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER,
OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive
Force Field
por: Lee, Jumin, et al.
Publicado: (2015) -
Perturbation of Long-Range
Water Dynamics as the Mechanism
for the Antifreeze Activity of Antifreeze Glycoprotein
por: Mallajosyula, Sairam S., et al.
Publicado: (2014) -
charmm2gmx: An
Automated Method to Port the CHARMM
Additive Force Field to GROMACS
por: Wacha, András F., et al.
Publicado: (2023) -
A Comparative
Study of Transferable Aspherical Pseudoatom
Databank and Classical Force Fields for Predicting Electrostatic Interactions
in Molecular Dimers
por: Kumar, Prashant, et al.
Publicado: (2014) -
Balancing
the Interactions of Ions, Water, and DNA
in the Drude Polarizable Force Field
por: Savelyev, Alexey, et al.
Publicado: (2014)