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Environmental Controls Over Actinobacteria Communities in Ecological Sensitive Yanshan Mountains Zone

The Yanshan Mountains are one of the oldest mountain ranges in the world. They are located in an ecologically sensitive zone in northern China near the Hu Huanyong Line. In this metagenomic study, we investigated the diversity of Actinobacteria in soils at 10 sites (YS1–YS10) on the Yanshan Mountain...

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Autores principales: Tang, Hui, Shi, Xunxun, Wang, Xiaofei, Hao, Huanhuan, Zhang, Xiu-Min, Zhang, Li-Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4801888/
https://www.ncbi.nlm.nih.gov/pubmed/27047461
http://dx.doi.org/10.3389/fmicb.2016.00343
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author Tang, Hui
Shi, Xunxun
Wang, Xiaofei
Hao, Huanhuan
Zhang, Xiu-Min
Zhang, Li-Ping
author_facet Tang, Hui
Shi, Xunxun
Wang, Xiaofei
Hao, Huanhuan
Zhang, Xiu-Min
Zhang, Li-Ping
author_sort Tang, Hui
collection PubMed
description The Yanshan Mountains are one of the oldest mountain ranges in the world. They are located in an ecologically sensitive zone in northern China near the Hu Huanyong Line. In this metagenomic study, we investigated the diversity of Actinobacteria in soils at 10 sites (YS1–YS10) on the Yanshan Mountains. First, we assessed the effect of different soil prtreatment on Actinobacteria recovery. With the soil pretreatment method: air drying of the soil sample, followed by exposure to 120°C for 1 h, we observed the higher Actinobacteria diversity in a relatively small number of clone libraries. No significant differences were observed in the Actinobacterial diversity of soils from sites YS2, YS3, YS4, YS6, YS8, YS9, or YS10 (P > 0.1). However, there were differences (P < 0.05) from the YS7 site and other sites, especially in response to environmental change. And we observed highly significant differences (P < 0.001) in Actinobacterial diversity of the soil from YS7 and that from YS4 and YS8 sites. The climatic characteristics of mean active accumulated temperature, annual mean precipitation, and annual mean temperature, and biogeochemical data of total phosphorus contributed to the diversity of Actinobacterial communities in soils at YS1, YS3, YS4, and YS5 sites. Compared to the climatic factors, the biogeochemical factors mostly contributed in shaping the Actinobacterial community. This work provides evidence that the diversity of Actinobacterial communities in soils from the Yashan Mountains show regional biogeographic patterns and that community membership change along the north-south distribution of the Hu Huanyong Line.
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spelling pubmed-48018882016-04-04 Environmental Controls Over Actinobacteria Communities in Ecological Sensitive Yanshan Mountains Zone Tang, Hui Shi, Xunxun Wang, Xiaofei Hao, Huanhuan Zhang, Xiu-Min Zhang, Li-Ping Front Microbiol Microbiology The Yanshan Mountains are one of the oldest mountain ranges in the world. They are located in an ecologically sensitive zone in northern China near the Hu Huanyong Line. In this metagenomic study, we investigated the diversity of Actinobacteria in soils at 10 sites (YS1–YS10) on the Yanshan Mountains. First, we assessed the effect of different soil prtreatment on Actinobacteria recovery. With the soil pretreatment method: air drying of the soil sample, followed by exposure to 120°C for 1 h, we observed the higher Actinobacteria diversity in a relatively small number of clone libraries. No significant differences were observed in the Actinobacterial diversity of soils from sites YS2, YS3, YS4, YS6, YS8, YS9, or YS10 (P > 0.1). However, there were differences (P < 0.05) from the YS7 site and other sites, especially in response to environmental change. And we observed highly significant differences (P < 0.001) in Actinobacterial diversity of the soil from YS7 and that from YS4 and YS8 sites. The climatic characteristics of mean active accumulated temperature, annual mean precipitation, and annual mean temperature, and biogeochemical data of total phosphorus contributed to the diversity of Actinobacterial communities in soils at YS1, YS3, YS4, and YS5 sites. Compared to the climatic factors, the biogeochemical factors mostly contributed in shaping the Actinobacterial community. This work provides evidence that the diversity of Actinobacterial communities in soils from the Yashan Mountains show regional biogeographic patterns and that community membership change along the north-south distribution of the Hu Huanyong Line. Frontiers Media S.A. 2016-03-22 /pmc/articles/PMC4801888/ /pubmed/27047461 http://dx.doi.org/10.3389/fmicb.2016.00343 Text en Copyright © 2016 Tang, Shi, Wang, Hao, Zhang and Zhang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Tang, Hui
Shi, Xunxun
Wang, Xiaofei
Hao, Huanhuan
Zhang, Xiu-Min
Zhang, Li-Ping
Environmental Controls Over Actinobacteria Communities in Ecological Sensitive Yanshan Mountains Zone
title Environmental Controls Over Actinobacteria Communities in Ecological Sensitive Yanshan Mountains Zone
title_full Environmental Controls Over Actinobacteria Communities in Ecological Sensitive Yanshan Mountains Zone
title_fullStr Environmental Controls Over Actinobacteria Communities in Ecological Sensitive Yanshan Mountains Zone
title_full_unstemmed Environmental Controls Over Actinobacteria Communities in Ecological Sensitive Yanshan Mountains Zone
title_short Environmental Controls Over Actinobacteria Communities in Ecological Sensitive Yanshan Mountains Zone
title_sort environmental controls over actinobacteria communities in ecological sensitive yanshan mountains zone
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4801888/
https://www.ncbi.nlm.nih.gov/pubmed/27047461
http://dx.doi.org/10.3389/fmicb.2016.00343
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