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Clinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry

Information about the size of a tumor and its temporal evolution is needed for diagnosis as well as treatment of brain tumor patients. The aim of the study was to investigate the potential of a fully-automatic segmentation method, called BraTumIA, for longitudinal brain tumor volumetry by comparing...

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Autores principales: Meier, Raphael, Knecht, Urspeter, Loosli, Tina, Bauer, Stefan, Slotboom, Johannes, Wiest, Roland, Reyes, Mauricio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4802217/
https://www.ncbi.nlm.nih.gov/pubmed/27001047
http://dx.doi.org/10.1038/srep23376
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author Meier, Raphael
Knecht, Urspeter
Loosli, Tina
Bauer, Stefan
Slotboom, Johannes
Wiest, Roland
Reyes, Mauricio
author_facet Meier, Raphael
Knecht, Urspeter
Loosli, Tina
Bauer, Stefan
Slotboom, Johannes
Wiest, Roland
Reyes, Mauricio
author_sort Meier, Raphael
collection PubMed
description Information about the size of a tumor and its temporal evolution is needed for diagnosis as well as treatment of brain tumor patients. The aim of the study was to investigate the potential of a fully-automatic segmentation method, called BraTumIA, for longitudinal brain tumor volumetry by comparing the automatically estimated volumes with ground truth data acquired via manual segmentation. Longitudinal Magnetic Resonance (MR) Imaging data of 14 patients with newly diagnosed glioblastoma encompassing 64 MR acquisitions, ranging from preoperative up to 12 month follow-up images, was analysed. Manual segmentation was performed by two human raters. Strong correlations (R = 0.83–0.96, p < 0.001) were observed between volumetric estimates of BraTumIA and of each of the human raters for the contrast-enhancing (CET) and non-enhancing T(2)-hyperintense tumor compartments (NCE-T(2)). A quantitative analysis of the inter-rater disagreement showed that the disagreement between BraTumIA and each of the human raters was comparable to the disagreement between the human raters. In summary, BraTumIA generated volumetric trend curves of contrast-enhancing and non-enhancing T(2)-hyperintense tumor compartments comparable to estimates of human raters. These findings suggest the potential of automated longitudinal tumor segmentation to substitute manual volumetric follow-up of contrast-enhancing and non-enhancing T(2)-hyperintense tumor compartments.
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spelling pubmed-48022172016-03-23 Clinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry Meier, Raphael Knecht, Urspeter Loosli, Tina Bauer, Stefan Slotboom, Johannes Wiest, Roland Reyes, Mauricio Sci Rep Article Information about the size of a tumor and its temporal evolution is needed for diagnosis as well as treatment of brain tumor patients. The aim of the study was to investigate the potential of a fully-automatic segmentation method, called BraTumIA, for longitudinal brain tumor volumetry by comparing the automatically estimated volumes with ground truth data acquired via manual segmentation. Longitudinal Magnetic Resonance (MR) Imaging data of 14 patients with newly diagnosed glioblastoma encompassing 64 MR acquisitions, ranging from preoperative up to 12 month follow-up images, was analysed. Manual segmentation was performed by two human raters. Strong correlations (R = 0.83–0.96, p < 0.001) were observed between volumetric estimates of BraTumIA and of each of the human raters for the contrast-enhancing (CET) and non-enhancing T(2)-hyperintense tumor compartments (NCE-T(2)). A quantitative analysis of the inter-rater disagreement showed that the disagreement between BraTumIA and each of the human raters was comparable to the disagreement between the human raters. In summary, BraTumIA generated volumetric trend curves of contrast-enhancing and non-enhancing T(2)-hyperintense tumor compartments comparable to estimates of human raters. These findings suggest the potential of automated longitudinal tumor segmentation to substitute manual volumetric follow-up of contrast-enhancing and non-enhancing T(2)-hyperintense tumor compartments. Nature Publishing Group 2016-03-22 /pmc/articles/PMC4802217/ /pubmed/27001047 http://dx.doi.org/10.1038/srep23376 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Meier, Raphael
Knecht, Urspeter
Loosli, Tina
Bauer, Stefan
Slotboom, Johannes
Wiest, Roland
Reyes, Mauricio
Clinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry
title Clinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry
title_full Clinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry
title_fullStr Clinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry
title_full_unstemmed Clinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry
title_short Clinical Evaluation of a Fully-automatic Segmentation Method for Longitudinal Brain Tumor Volumetry
title_sort clinical evaluation of a fully-automatic segmentation method for longitudinal brain tumor volumetry
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4802217/
https://www.ncbi.nlm.nih.gov/pubmed/27001047
http://dx.doi.org/10.1038/srep23376
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