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Data on phylogenetic analyses of gazelles (genus Gazella) based on mitochondrial and nuclear intron markers

The data provided is related to the article “Phylogenetic analyses of gazelles reveal repeated transitions of key ecological traits and provide novel insights into the origin of the genus Gazella” [1]. The data is based on 48 tissue samples of all nine extant species of the genus Gazella, namely Gaz...

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Autores principales: Lerp, Hannes, Klaus, Sebastian, Allgöwer, Stefanie, Wronski, Torsten, Pfenninger, Markus, Plath, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4802422/
https://www.ncbi.nlm.nih.gov/pubmed/27054158
http://dx.doi.org/10.1016/j.dib.2016.02.062
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author Lerp, Hannes
Klaus, Sebastian
Allgöwer, Stefanie
Wronski, Torsten
Pfenninger, Markus
Plath, Martin
author_facet Lerp, Hannes
Klaus, Sebastian
Allgöwer, Stefanie
Wronski, Torsten
Pfenninger, Markus
Plath, Martin
author_sort Lerp, Hannes
collection PubMed
description The data provided is related to the article “Phylogenetic analyses of gazelles reveal repeated transitions of key ecological traits and provide novel insights into the origin of the genus Gazella” [1]. The data is based on 48 tissue samples of all nine extant species of the genus Gazella, namely Gazella gazella, Gazella arabica, Gazella bennettii, Gazella cuvieri, Gazella dorcas, Gazella leptoceros, Gazella marica, Gazella spekei, and Gazella subgutturosa and four related taxa (Saiga tatarica, Antidorcas marsupialis, Antilope cervicapra and Eudorcas rufifrons). It comprises alignments of sequences of a cytochrome b data set and of six nuclear intron markers. For the latter new primers were designed based on cattle and sheep genomes. Based on these alignments phylogenetic trees were inferred using Bayesian Inference and Maximum Likelihood methods. Furthermore, ancestral character states (inferred with BayesTraits 1.0) and ancestral ranges based on a Dispersal-Extinction-Cladogenesis model were estimated and results׳ files were stored within this article.
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spelling pubmed-48024222016-04-06 Data on phylogenetic analyses of gazelles (genus Gazella) based on mitochondrial and nuclear intron markers Lerp, Hannes Klaus, Sebastian Allgöwer, Stefanie Wronski, Torsten Pfenninger, Markus Plath, Martin Data Brief Data Article The data provided is related to the article “Phylogenetic analyses of gazelles reveal repeated transitions of key ecological traits and provide novel insights into the origin of the genus Gazella” [1]. The data is based on 48 tissue samples of all nine extant species of the genus Gazella, namely Gazella gazella, Gazella arabica, Gazella bennettii, Gazella cuvieri, Gazella dorcas, Gazella leptoceros, Gazella marica, Gazella spekei, and Gazella subgutturosa and four related taxa (Saiga tatarica, Antidorcas marsupialis, Antilope cervicapra and Eudorcas rufifrons). It comprises alignments of sequences of a cytochrome b data set and of six nuclear intron markers. For the latter new primers were designed based on cattle and sheep genomes. Based on these alignments phylogenetic trees were inferred using Bayesian Inference and Maximum Likelihood methods. Furthermore, ancestral character states (inferred with BayesTraits 1.0) and ancestral ranges based on a Dispersal-Extinction-Cladogenesis model were estimated and results׳ files were stored within this article. Elsevier 2016-03-02 /pmc/articles/PMC4802422/ /pubmed/27054158 http://dx.doi.org/10.1016/j.dib.2016.02.062 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Lerp, Hannes
Klaus, Sebastian
Allgöwer, Stefanie
Wronski, Torsten
Pfenninger, Markus
Plath, Martin
Data on phylogenetic analyses of gazelles (genus Gazella) based on mitochondrial and nuclear intron markers
title Data on phylogenetic analyses of gazelles (genus Gazella) based on mitochondrial and nuclear intron markers
title_full Data on phylogenetic analyses of gazelles (genus Gazella) based on mitochondrial and nuclear intron markers
title_fullStr Data on phylogenetic analyses of gazelles (genus Gazella) based on mitochondrial and nuclear intron markers
title_full_unstemmed Data on phylogenetic analyses of gazelles (genus Gazella) based on mitochondrial and nuclear intron markers
title_short Data on phylogenetic analyses of gazelles (genus Gazella) based on mitochondrial and nuclear intron markers
title_sort data on phylogenetic analyses of gazelles (genus gazella) based on mitochondrial and nuclear intron markers
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4802422/
https://www.ncbi.nlm.nih.gov/pubmed/27054158
http://dx.doi.org/10.1016/j.dib.2016.02.062
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