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OncDRS: An integrative clinical and genomic data platform for enabling translational research and precision medicine
We live in the genomic era of medicine, where a patient's genomic/molecular data is becoming increasingly important for disease diagnosis, identification of targeted therapy, and risk assessment for adverse reactions. However, decoding the genomic test results and integrating it with clinical d...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4803771/ https://www.ncbi.nlm.nih.gov/pubmed/27054074 http://dx.doi.org/10.1016/j.atg.2015.08.005 |
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author | Orechia, John Pathak, Ameet Shi, Yunling Nawani, Aniket Belozerov, Andrey Fontes, Caitlin Lakhiani, Camille Jawale, Chetan Patel, Chetansharan Quinn, Daniel Botvinnik, Dmitry Mei, Eddie Cotter, Elizabeth Byleckie, James Ullman-Cullere, Mollie Chhetri, Padam Chalasani, Poornima Karnam, Purushotham Beaudoin, Ronald Sahu, Sandeep Belozerova, Yelena Mathew, Jomol P. |
author_facet | Orechia, John Pathak, Ameet Shi, Yunling Nawani, Aniket Belozerov, Andrey Fontes, Caitlin Lakhiani, Camille Jawale, Chetan Patel, Chetansharan Quinn, Daniel Botvinnik, Dmitry Mei, Eddie Cotter, Elizabeth Byleckie, James Ullman-Cullere, Mollie Chhetri, Padam Chalasani, Poornima Karnam, Purushotham Beaudoin, Ronald Sahu, Sandeep Belozerova, Yelena Mathew, Jomol P. |
author_sort | Orechia, John |
collection | PubMed |
description | We live in the genomic era of medicine, where a patient's genomic/molecular data is becoming increasingly important for disease diagnosis, identification of targeted therapy, and risk assessment for adverse reactions. However, decoding the genomic test results and integrating it with clinical data for retrospective studies and cohort identification for prospective clinical trials is still a challenging task. In order to overcome these barriers, we developed an overarching enterprise informatics framework for translational research and personalized medicine called Synergistic Patient and Research Knowledge Systems (SPARKS) and a suite of tools called Oncology Data Retrieval Systems (OncDRS). OncDRS enables seamless data integration, secure and self-navigated query and extraction of clinical and genomic data from heterogeneous sources. Within a year of release, the system has facilitated more than 1500 research queries and has delivered data for more than 50 research studies. |
format | Online Article Text |
id | pubmed-4803771 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-48037712016-04-06 OncDRS: An integrative clinical and genomic data platform for enabling translational research and precision medicine Orechia, John Pathak, Ameet Shi, Yunling Nawani, Aniket Belozerov, Andrey Fontes, Caitlin Lakhiani, Camille Jawale, Chetan Patel, Chetansharan Quinn, Daniel Botvinnik, Dmitry Mei, Eddie Cotter, Elizabeth Byleckie, James Ullman-Cullere, Mollie Chhetri, Padam Chalasani, Poornima Karnam, Purushotham Beaudoin, Ronald Sahu, Sandeep Belozerova, Yelena Mathew, Jomol P. Appl Transl Genom Article We live in the genomic era of medicine, where a patient's genomic/molecular data is becoming increasingly important for disease diagnosis, identification of targeted therapy, and risk assessment for adverse reactions. However, decoding the genomic test results and integrating it with clinical data for retrospective studies and cohort identification for prospective clinical trials is still a challenging task. In order to overcome these barriers, we developed an overarching enterprise informatics framework for translational research and personalized medicine called Synergistic Patient and Research Knowledge Systems (SPARKS) and a suite of tools called Oncology Data Retrieval Systems (OncDRS). OncDRS enables seamless data integration, secure and self-navigated query and extraction of clinical and genomic data from heterogeneous sources. Within a year of release, the system has facilitated more than 1500 research queries and has delivered data for more than 50 research studies. Elsevier 2015-09-14 /pmc/articles/PMC4803771/ /pubmed/27054074 http://dx.doi.org/10.1016/j.atg.2015.08.005 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Orechia, John Pathak, Ameet Shi, Yunling Nawani, Aniket Belozerov, Andrey Fontes, Caitlin Lakhiani, Camille Jawale, Chetan Patel, Chetansharan Quinn, Daniel Botvinnik, Dmitry Mei, Eddie Cotter, Elizabeth Byleckie, James Ullman-Cullere, Mollie Chhetri, Padam Chalasani, Poornima Karnam, Purushotham Beaudoin, Ronald Sahu, Sandeep Belozerova, Yelena Mathew, Jomol P. OncDRS: An integrative clinical and genomic data platform for enabling translational research and precision medicine |
title | OncDRS: An integrative clinical and genomic data platform for enabling translational research and precision medicine |
title_full | OncDRS: An integrative clinical and genomic data platform for enabling translational research and precision medicine |
title_fullStr | OncDRS: An integrative clinical and genomic data platform for enabling translational research and precision medicine |
title_full_unstemmed | OncDRS: An integrative clinical and genomic data platform for enabling translational research and precision medicine |
title_short | OncDRS: An integrative clinical and genomic data platform for enabling translational research and precision medicine |
title_sort | oncdrs: an integrative clinical and genomic data platform for enabling translational research and precision medicine |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4803771/ https://www.ncbi.nlm.nih.gov/pubmed/27054074 http://dx.doi.org/10.1016/j.atg.2015.08.005 |
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