Cargando…

The real cost of sequencing: scaling computation to keep pace with data generation

As the cost of sequencing continues to decrease and the amount of sequence data generated grows, new paradigms for data storage and analysis are increasingly important. The relative scaling behavior of these evolving technologies will impact genomics research moving forward.

Detalles Bibliográficos
Autores principales: Muir, Paul, Li, Shantao, Lou, Shaoke, Wang, Daifeng, Spakowicz, Daniel J, Salichos, Leonidas, Zhang, Jing, Weinstock, George M., Isaacs, Farren, Rozowsky, Joel, Gerstein, Mark
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4806511/
https://www.ncbi.nlm.nih.gov/pubmed/27009100
http://dx.doi.org/10.1186/s13059-016-0917-0
_version_ 1782423253150597120
author Muir, Paul
Li, Shantao
Lou, Shaoke
Wang, Daifeng
Spakowicz, Daniel J
Salichos, Leonidas
Zhang, Jing
Weinstock, George M.
Isaacs, Farren
Rozowsky, Joel
Gerstein, Mark
author_facet Muir, Paul
Li, Shantao
Lou, Shaoke
Wang, Daifeng
Spakowicz, Daniel J
Salichos, Leonidas
Zhang, Jing
Weinstock, George M.
Isaacs, Farren
Rozowsky, Joel
Gerstein, Mark
author_sort Muir, Paul
collection PubMed
description As the cost of sequencing continues to decrease and the amount of sequence data generated grows, new paradigms for data storage and analysis are increasingly important. The relative scaling behavior of these evolving technologies will impact genomics research moving forward.
format Online
Article
Text
id pubmed-4806511
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-48065112016-03-25 The real cost of sequencing: scaling computation to keep pace with data generation Muir, Paul Li, Shantao Lou, Shaoke Wang, Daifeng Spakowicz, Daniel J Salichos, Leonidas Zhang, Jing Weinstock, George M. Isaacs, Farren Rozowsky, Joel Gerstein, Mark Genome Biol Opinion As the cost of sequencing continues to decrease and the amount of sequence data generated grows, new paradigms for data storage and analysis are increasingly important. The relative scaling behavior of these evolving technologies will impact genomics research moving forward. BioMed Central 2016-03-23 /pmc/articles/PMC4806511/ /pubmed/27009100 http://dx.doi.org/10.1186/s13059-016-0917-0 Text en © Muir et al. 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Opinion
Muir, Paul
Li, Shantao
Lou, Shaoke
Wang, Daifeng
Spakowicz, Daniel J
Salichos, Leonidas
Zhang, Jing
Weinstock, George M.
Isaacs, Farren
Rozowsky, Joel
Gerstein, Mark
The real cost of sequencing: scaling computation to keep pace with data generation
title The real cost of sequencing: scaling computation to keep pace with data generation
title_full The real cost of sequencing: scaling computation to keep pace with data generation
title_fullStr The real cost of sequencing: scaling computation to keep pace with data generation
title_full_unstemmed The real cost of sequencing: scaling computation to keep pace with data generation
title_short The real cost of sequencing: scaling computation to keep pace with data generation
title_sort real cost of sequencing: scaling computation to keep pace with data generation
topic Opinion
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4806511/
https://www.ncbi.nlm.nih.gov/pubmed/27009100
http://dx.doi.org/10.1186/s13059-016-0917-0
work_keys_str_mv AT muirpaul therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT lishantao therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT loushaoke therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT wangdaifeng therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT spakowiczdanielj therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT salichosleonidas therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT zhangjing therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT weinstockgeorgem therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT isaacsfarren therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT rozowskyjoel therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT gersteinmark therealcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT muirpaul realcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT lishantao realcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT loushaoke realcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT wangdaifeng realcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT spakowiczdanielj realcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT salichosleonidas realcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT zhangjing realcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT weinstockgeorgem realcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT isaacsfarren realcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT rozowskyjoel realcostofsequencingscalingcomputationtokeeppacewithdatageneration
AT gersteinmark realcostofsequencingscalingcomputationtokeeppacewithdatageneration