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CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state

CoDNaS (conformational diversity of the native state) is a protein conformational diversity database. Conformational diversity describes structural differences between conformers that define the native state of proteins. It is a key concept to understand protein function and biological processes rel...

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Autores principales: Monzon, Alexander Miguel, Rohr, Cristian Oscar, Fornasari, María Silvina, Parisi, Gustavo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4809262/
https://www.ncbi.nlm.nih.gov/pubmed/27022160
http://dx.doi.org/10.1093/database/baw038
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author Monzon, Alexander Miguel
Rohr, Cristian Oscar
Fornasari, María Silvina
Parisi, Gustavo
author_facet Monzon, Alexander Miguel
Rohr, Cristian Oscar
Fornasari, María Silvina
Parisi, Gustavo
author_sort Monzon, Alexander Miguel
collection PubMed
description CoDNaS (conformational diversity of the native state) is a protein conformational diversity database. Conformational diversity describes structural differences between conformers that define the native state of proteins. It is a key concept to understand protein function and biological processes related to protein functions. CoDNaS offers a well curated database that is experimentally driven, thoroughly linked, and annotated. CoDNaS facilitates the extraction of key information on small structural differences based on protein movements. CoDNaS enables users to easily relate the degree of conformational diversity with physical, chemical and biological properties derived from experiments on protein structure and biological characteristics. The new version of CoDNaS includes ∼70% of all available protein structures, and new tools have been added that run sequence searches, display structural flexibility profiles and allow users to browse the database for different structural classes. These tools facilitate the exploration of protein conformational diversity and its role in protein function. Database URL: http://ufq.unq.edu.ar/codnas
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spelling pubmed-48092622016-03-29 CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state Monzon, Alexander Miguel Rohr, Cristian Oscar Fornasari, María Silvina Parisi, Gustavo Database (Oxford) Database Update CoDNaS (conformational diversity of the native state) is a protein conformational diversity database. Conformational diversity describes structural differences between conformers that define the native state of proteins. It is a key concept to understand protein function and biological processes related to protein functions. CoDNaS offers a well curated database that is experimentally driven, thoroughly linked, and annotated. CoDNaS facilitates the extraction of key information on small structural differences based on protein movements. CoDNaS enables users to easily relate the degree of conformational diversity with physical, chemical and biological properties derived from experiments on protein structure and biological characteristics. The new version of CoDNaS includes ∼70% of all available protein structures, and new tools have been added that run sequence searches, display structural flexibility profiles and allow users to browse the database for different structural classes. These tools facilitate the exploration of protein conformational diversity and its role in protein function. Database URL: http://ufq.unq.edu.ar/codnas Oxford University Press 2016-03-28 /pmc/articles/PMC4809262/ /pubmed/27022160 http://dx.doi.org/10.1093/database/baw038 Text en © The Author(s) 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Update
Monzon, Alexander Miguel
Rohr, Cristian Oscar
Fornasari, María Silvina
Parisi, Gustavo
CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state
title CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state
title_full CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state
title_fullStr CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state
title_full_unstemmed CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state
title_short CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state
title_sort codnas 2.0: a comprehensive database of protein conformational diversity in the native state
topic Database Update
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4809262/
https://www.ncbi.nlm.nih.gov/pubmed/27022160
http://dx.doi.org/10.1093/database/baw038
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