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CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state
CoDNaS (conformational diversity of the native state) is a protein conformational diversity database. Conformational diversity describes structural differences between conformers that define the native state of proteins. It is a key concept to understand protein function and biological processes rel...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4809262/ https://www.ncbi.nlm.nih.gov/pubmed/27022160 http://dx.doi.org/10.1093/database/baw038 |
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author | Monzon, Alexander Miguel Rohr, Cristian Oscar Fornasari, María Silvina Parisi, Gustavo |
author_facet | Monzon, Alexander Miguel Rohr, Cristian Oscar Fornasari, María Silvina Parisi, Gustavo |
author_sort | Monzon, Alexander Miguel |
collection | PubMed |
description | CoDNaS (conformational diversity of the native state) is a protein conformational diversity database. Conformational diversity describes structural differences between conformers that define the native state of proteins. It is a key concept to understand protein function and biological processes related to protein functions. CoDNaS offers a well curated database that is experimentally driven, thoroughly linked, and annotated. CoDNaS facilitates the extraction of key information on small structural differences based on protein movements. CoDNaS enables users to easily relate the degree of conformational diversity with physical, chemical and biological properties derived from experiments on protein structure and biological characteristics. The new version of CoDNaS includes ∼70% of all available protein structures, and new tools have been added that run sequence searches, display structural flexibility profiles and allow users to browse the database for different structural classes. These tools facilitate the exploration of protein conformational diversity and its role in protein function. Database URL: http://ufq.unq.edu.ar/codnas |
format | Online Article Text |
id | pubmed-4809262 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-48092622016-03-29 CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state Monzon, Alexander Miguel Rohr, Cristian Oscar Fornasari, María Silvina Parisi, Gustavo Database (Oxford) Database Update CoDNaS (conformational diversity of the native state) is a protein conformational diversity database. Conformational diversity describes structural differences between conformers that define the native state of proteins. It is a key concept to understand protein function and biological processes related to protein functions. CoDNaS offers a well curated database that is experimentally driven, thoroughly linked, and annotated. CoDNaS facilitates the extraction of key information on small structural differences based on protein movements. CoDNaS enables users to easily relate the degree of conformational diversity with physical, chemical and biological properties derived from experiments on protein structure and biological characteristics. The new version of CoDNaS includes ∼70% of all available protein structures, and new tools have been added that run sequence searches, display structural flexibility profiles and allow users to browse the database for different structural classes. These tools facilitate the exploration of protein conformational diversity and its role in protein function. Database URL: http://ufq.unq.edu.ar/codnas Oxford University Press 2016-03-28 /pmc/articles/PMC4809262/ /pubmed/27022160 http://dx.doi.org/10.1093/database/baw038 Text en © The Author(s) 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Update Monzon, Alexander Miguel Rohr, Cristian Oscar Fornasari, María Silvina Parisi, Gustavo CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state |
title | CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state |
title_full | CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state |
title_fullStr | CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state |
title_full_unstemmed | CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state |
title_short | CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state |
title_sort | codnas 2.0: a comprehensive database of protein conformational diversity in the native state |
topic | Database Update |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4809262/ https://www.ncbi.nlm.nih.gov/pubmed/27022160 http://dx.doi.org/10.1093/database/baw038 |
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