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Efficient Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models
Quantitative systems pharmacology models mechanistically describe a biological system and the effect of drug treatment on system behavior. Because these models rarely are identifiable from the available data, the uncertainty in physiological parameters may be sampled to create alternative parameteri...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4809626/ https://www.ncbi.nlm.nih.gov/pubmed/27069777 http://dx.doi.org/10.1002/psp4.12063 |
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author | Allen, RJ Rieger, TR Musante, CJ |
author_facet | Allen, RJ Rieger, TR Musante, CJ |
author_sort | Allen, RJ |
collection | PubMed |
description | Quantitative systems pharmacology models mechanistically describe a biological system and the effect of drug treatment on system behavior. Because these models rarely are identifiable from the available data, the uncertainty in physiological parameters may be sampled to create alternative parameterizations of the model, sometimes termed “virtual patients.” In order to reproduce the statistics of a clinical population, virtual patients are often weighted to form a virtual population that reflects the baseline characteristics of the clinical cohort. Here we introduce a novel technique to efficiently generate virtual patients and, from this ensemble, demonstrate how to select a virtual population that matches the observed data without the need for weighting. This approach improves confidence in model predictions by mitigating the risk that spurious virtual patients become overrepresented in virtual populations. |
format | Online Article Text |
id | pubmed-4809626 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-48096262016-04-11 Efficient Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models Allen, RJ Rieger, TR Musante, CJ CPT Pharmacometrics Syst Pharmacol Original Articles Quantitative systems pharmacology models mechanistically describe a biological system and the effect of drug treatment on system behavior. Because these models rarely are identifiable from the available data, the uncertainty in physiological parameters may be sampled to create alternative parameterizations of the model, sometimes termed “virtual patients.” In order to reproduce the statistics of a clinical population, virtual patients are often weighted to form a virtual population that reflects the baseline characteristics of the clinical cohort. Here we introduce a novel technique to efficiently generate virtual patients and, from this ensemble, demonstrate how to select a virtual population that matches the observed data without the need for weighting. This approach improves confidence in model predictions by mitigating the risk that spurious virtual patients become overrepresented in virtual populations. John Wiley and Sons Inc. 2016-03-17 2016-03 /pmc/articles/PMC4809626/ /pubmed/27069777 http://dx.doi.org/10.1002/psp4.12063 Text en © 2016 The Authors CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals, Inc. on behalf of American Society for Clinical Pharmacology and Therapeutics This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial (http://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Original Articles Allen, RJ Rieger, TR Musante, CJ Efficient Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models |
title | Efficient Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models |
title_full | Efficient Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models |
title_fullStr | Efficient Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models |
title_full_unstemmed | Efficient Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models |
title_short | Efficient Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models |
title_sort | efficient generation and selection of virtual populations in quantitative systems pharmacology models |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4809626/ https://www.ncbi.nlm.nih.gov/pubmed/27069777 http://dx.doi.org/10.1002/psp4.12063 |
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