Linking Virus Genomes with Host Taxonomy

Environmental genomics can describe all forms of organisms—cellular and viral—present in a community. The analysis of such eco-systems biology data relies heavily on reference databases, e.g., taxonomy or gene function databases. Reference databases of symbiosis sensu lato, although essential for th...

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Autores principales: Mihara, Tomoko, Nishimura, Yosuke, Shimizu, Yugo, Nishiyama, Hiroki, Yoshikawa, Genki, Uehara, Hideya, Hingamp, Pascal, Goto, Susumu, Ogata, Hiroyuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2016
Materias:
Communication
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810256/
https://www.ncbi.nlm.nih.gov/pubmed/26938550
http://dx.doi.org/10.3390/v8030066
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author Mihara, Tomoko
Nishimura, Yosuke
Shimizu, Yugo
Nishiyama, Hiroki
Yoshikawa, Genki
Uehara, Hideya
Hingamp, Pascal
Goto, Susumu
Ogata, Hiroyuki
author_facet Mihara, Tomoko
Nishimura, Yosuke
Shimizu, Yugo
Nishiyama, Hiroki
Yoshikawa, Genki
Uehara, Hideya
Hingamp, Pascal
Goto, Susumu
Ogata, Hiroyuki
author_sort Mihara, Tomoko
collection PubMed
description Environmental genomics can describe all forms of organisms—cellular and viral—present in a community. The analysis of such eco-systems biology data relies heavily on reference databases, e.g., taxonomy or gene function databases. Reference databases of symbiosis sensu lato, although essential for the analysis of organism interaction networks, are lacking. By mining existing databases and literature, we here provide a comprehensive and manually curated database of taxonomic links between viruses and their cellular hosts.
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spelling pubmed-48102562016-04-04 Linking Virus Genomes with Host Taxonomy Mihara, Tomoko Nishimura, Yosuke Shimizu, Yugo Nishiyama, Hiroki Yoshikawa, Genki Uehara, Hideya Hingamp, Pascal Goto, Susumu Ogata, Hiroyuki Viruses Communication Environmental genomics can describe all forms of organisms—cellular and viral—present in a community. The analysis of such eco-systems biology data relies heavily on reference databases, e.g., taxonomy or gene function databases. Reference databases of symbiosis sensu lato, although essential for the analysis of organism interaction networks, are lacking. By mining existing databases and literature, we here provide a comprehensive and manually curated database of taxonomic links between viruses and their cellular hosts. MDPI 2016-03-01 /pmc/articles/PMC4810256/ /pubmed/26938550 http://dx.doi.org/10.3390/v8030066 Text en © 2016 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons by Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Communication
Mihara, Tomoko
Nishimura, Yosuke
Shimizu, Yugo
Nishiyama, Hiroki
Yoshikawa, Genki
Uehara, Hideya
Hingamp, Pascal
Goto, Susumu
Ogata, Hiroyuki
Linking Virus Genomes with Host Taxonomy
title Linking Virus Genomes with Host Taxonomy
title_full Linking Virus Genomes with Host Taxonomy
title_fullStr Linking Virus Genomes with Host Taxonomy
title_full_unstemmed Linking Virus Genomes with Host Taxonomy
title_short Linking Virus Genomes with Host Taxonomy
title_sort linking virus genomes with host taxonomy
topic Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810256/
https://www.ncbi.nlm.nih.gov/pubmed/26938550
http://dx.doi.org/10.3390/v8030066
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