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How many dinosaur species were there? Fossil bias and true richness estimated using a Poisson sampling model
The fossil record is a rich source of information about biological diversity in the past. However, the fossil record is not only incomplete but has also inherent biases due to geological, physical, chemical and biological factors. Our knowledge of past life is also biased because of differences in a...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810813/ https://www.ncbi.nlm.nih.gov/pubmed/26977060 http://dx.doi.org/10.1098/rstb.2015.0219 |
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author | Starrfelt, Jostein Liow, Lee Hsiang |
author_facet | Starrfelt, Jostein Liow, Lee Hsiang |
author_sort | Starrfelt, Jostein |
collection | PubMed |
description | The fossil record is a rich source of information about biological diversity in the past. However, the fossil record is not only incomplete but has also inherent biases due to geological, physical, chemical and biological factors. Our knowledge of past life is also biased because of differences in academic and amateur interests and sampling efforts. As a result, not all individuals or species that lived in the past are equally likely to be discovered at any point in time or space. To reconstruct temporal dynamics of diversity using the fossil record, biased sampling must be explicitly taken into account. Here, we introduce an approach that uses the variation in the number of times each species is observed in the fossil record to estimate both sampling bias and true richness. We term our technique TRiPS (True Richness estimated using a Poisson Sampling model) and explore its robustness to violation of its assumptions via simulations. We then venture to estimate sampling bias and absolute species richness of dinosaurs in the geological stages of the Mesozoic. Using TRiPS, we estimate that 1936 (1543–2468) species of dinosaurs roamed the Earth during the Mesozoic. We also present improved estimates of species richness trajectories of the three major dinosaur clades: the sauropodomorphs, ornithischians and theropods, casting doubt on the Jurassic–Cretaceous extinction event and demonstrating that all dinosaur groups are subject to considerable sampling bias throughout the Mesozoic. |
format | Online Article Text |
id | pubmed-4810813 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-48108132016-04-06 How many dinosaur species were there? Fossil bias and true richness estimated using a Poisson sampling model Starrfelt, Jostein Liow, Lee Hsiang Philos Trans R Soc Lond B Biol Sci Articles The fossil record is a rich source of information about biological diversity in the past. However, the fossil record is not only incomplete but has also inherent biases due to geological, physical, chemical and biological factors. Our knowledge of past life is also biased because of differences in academic and amateur interests and sampling efforts. As a result, not all individuals or species that lived in the past are equally likely to be discovered at any point in time or space. To reconstruct temporal dynamics of diversity using the fossil record, biased sampling must be explicitly taken into account. Here, we introduce an approach that uses the variation in the number of times each species is observed in the fossil record to estimate both sampling bias and true richness. We term our technique TRiPS (True Richness estimated using a Poisson Sampling model) and explore its robustness to violation of its assumptions via simulations. We then venture to estimate sampling bias and absolute species richness of dinosaurs in the geological stages of the Mesozoic. Using TRiPS, we estimate that 1936 (1543–2468) species of dinosaurs roamed the Earth during the Mesozoic. We also present improved estimates of species richness trajectories of the three major dinosaur clades: the sauropodomorphs, ornithischians and theropods, casting doubt on the Jurassic–Cretaceous extinction event and demonstrating that all dinosaur groups are subject to considerable sampling bias throughout the Mesozoic. The Royal Society 2016-04-05 /pmc/articles/PMC4810813/ /pubmed/26977060 http://dx.doi.org/10.1098/rstb.2015.0219 Text en © 2016 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Articles Starrfelt, Jostein Liow, Lee Hsiang How many dinosaur species were there? Fossil bias and true richness estimated using a Poisson sampling model |
title | How many dinosaur species were there? Fossil bias and true richness estimated using a Poisson sampling model |
title_full | How many dinosaur species were there? Fossil bias and true richness estimated using a Poisson sampling model |
title_fullStr | How many dinosaur species were there? Fossil bias and true richness estimated using a Poisson sampling model |
title_full_unstemmed | How many dinosaur species were there? Fossil bias and true richness estimated using a Poisson sampling model |
title_short | How many dinosaur species were there? Fossil bias and true richness estimated using a Poisson sampling model |
title_sort | how many dinosaur species were there? fossil bias and true richness estimated using a poisson sampling model |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810813/ https://www.ncbi.nlm.nih.gov/pubmed/26977060 http://dx.doi.org/10.1098/rstb.2015.0219 |
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