Cargando…

Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology

In the present study we used the high-throughput sequencing technology Illumina MiSeq to develop 26 polymorphic microsatellite loci for the marine snail Gibbula divaricata. Four to 32 alleles were detected per locus across 30 samples analyzed. Observed and expected heterozygosities ranged from 0.130...

Descripción completa

Detalles Bibliográficos
Autores principales: López-Márquez, Violeta, García-Jiménez, Ricardo, Templado, José, Machordom, Annie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4811169/
https://www.ncbi.nlm.nih.gov/pubmed/27042392
http://dx.doi.org/10.7717/peerj.1789
_version_ 1782423907142205440
author López-Márquez, Violeta
García-Jiménez, Ricardo
Templado, José
Machordom, Annie
author_facet López-Márquez, Violeta
García-Jiménez, Ricardo
Templado, José
Machordom, Annie
author_sort López-Márquez, Violeta
collection PubMed
description In the present study we used the high-throughput sequencing technology Illumina MiSeq to develop 26 polymorphic microsatellite loci for the marine snail Gibbula divaricata. Four to 32 alleles were detected per locus across 30 samples analyzed. Observed and expected heterozygosities ranged from 0.130 to 0.933 and from 0.294 to 0.956, respectively. No significant linkage disequilibrium existed. Seven loci deviated from Hardy-Weinberg equilibrium that could not totally be explained by the presence of null alleles. Sympatric distribution with other species of the genus Gibbula, as G. rarilineata and G. varia, lead us to test the cross utility of the developed markers in these two species, which could be useful to test common biogeographic patterns or potential hybridization phenomena, since morphological intermediate specimens were found.
format Online
Article
Text
id pubmed-4811169
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher PeerJ Inc.
record_format MEDLINE/PubMed
spelling pubmed-48111692016-04-01 Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology López-Márquez, Violeta García-Jiménez, Ricardo Templado, José Machordom, Annie PeerJ Evolutionary Studies In the present study we used the high-throughput sequencing technology Illumina MiSeq to develop 26 polymorphic microsatellite loci for the marine snail Gibbula divaricata. Four to 32 alleles were detected per locus across 30 samples analyzed. Observed and expected heterozygosities ranged from 0.130 to 0.933 and from 0.294 to 0.956, respectively. No significant linkage disequilibrium existed. Seven loci deviated from Hardy-Weinberg equilibrium that could not totally be explained by the presence of null alleles. Sympatric distribution with other species of the genus Gibbula, as G. rarilineata and G. varia, lead us to test the cross utility of the developed markers in these two species, which could be useful to test common biogeographic patterns or potential hybridization phenomena, since morphological intermediate specimens were found. PeerJ Inc. 2016-03-24 /pmc/articles/PMC4811169/ /pubmed/27042392 http://dx.doi.org/10.7717/peerj.1789 Text en ©2016 López-Márquez et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Evolutionary Studies
López-Márquez, Violeta
García-Jiménez, Ricardo
Templado, José
Machordom, Annie
Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology
title Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology
title_full Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology
title_fullStr Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology
title_full_unstemmed Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology
title_short Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology
title_sort development and characterization of 26 novel microsatellite loci for the trochid gastropod gibbula divaricata (linnaeus, 1758), using illumina miseq next generation sequencing technology
topic Evolutionary Studies
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4811169/
https://www.ncbi.nlm.nih.gov/pubmed/27042392
http://dx.doi.org/10.7717/peerj.1789
work_keys_str_mv AT lopezmarquezvioleta developmentandcharacterizationof26novelmicrosatellitelociforthetrochidgastropodgibbuladivaricatalinnaeus1758usingilluminamiseqnextgenerationsequencingtechnology
AT garciajimenezricardo developmentandcharacterizationof26novelmicrosatellitelociforthetrochidgastropodgibbuladivaricatalinnaeus1758usingilluminamiseqnextgenerationsequencingtechnology
AT templadojose developmentandcharacterizationof26novelmicrosatellitelociforthetrochidgastropodgibbuladivaricatalinnaeus1758usingilluminamiseqnextgenerationsequencingtechnology
AT machordomannie developmentandcharacterizationof26novelmicrosatellitelociforthetrochidgastropodgibbuladivaricatalinnaeus1758usingilluminamiseqnextgenerationsequencingtechnology