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Dramatyping: a generic algorithm for detecting reasonable temporal correlations between drug administration and lab value alterations
According to the World Health Organization, one of the criteria for the standardized assessment of case causality in adverse drug reactions is the temporal relationship between the intake of a drug and the occurrence of a reaction or a laboratory test abnormality. This article presents and describes...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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PeerJ Inc.
2016
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4811173/ https://www.ncbi.nlm.nih.gov/pubmed/27042396 http://dx.doi.org/10.7717/peerj.1851 |
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author | Newe, Axel |
author_facet | Newe, Axel |
author_sort | Newe, Axel |
collection | PubMed |
description | According to the World Health Organization, one of the criteria for the standardized assessment of case causality in adverse drug reactions is the temporal relationship between the intake of a drug and the occurrence of a reaction or a laboratory test abnormality. This article presents and describes an algorithm for the detection of a reasonable temporal correlation between the administration of a drug and the alteration of a laboratory value course. The algorithm is designed to process normalized lab values and is therefore universally applicable. It has a sensitivity of 0.932 for the detection of lab value courses that show changes in temporal correlation with the administration of a drug and it has a specificity of 0.967 for the detection of lab value courses that show no changes. Therefore, the algorithm is appropriate to screen the data of electronic health records and to support human experts in revealing adverse drug reactions. A reference implementation in Python programming language is available. |
format | Online Article Text |
id | pubmed-4811173 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-48111732016-04-01 Dramatyping: a generic algorithm for detecting reasonable temporal correlations between drug administration and lab value alterations Newe, Axel PeerJ Drugs and Devices According to the World Health Organization, one of the criteria for the standardized assessment of case causality in adverse drug reactions is the temporal relationship between the intake of a drug and the occurrence of a reaction or a laboratory test abnormality. This article presents and describes an algorithm for the detection of a reasonable temporal correlation between the administration of a drug and the alteration of a laboratory value course. The algorithm is designed to process normalized lab values and is therefore universally applicable. It has a sensitivity of 0.932 for the detection of lab value courses that show changes in temporal correlation with the administration of a drug and it has a specificity of 0.967 for the detection of lab value courses that show no changes. Therefore, the algorithm is appropriate to screen the data of electronic health records and to support human experts in revealing adverse drug reactions. A reference implementation in Python programming language is available. PeerJ Inc. 2016-03-24 /pmc/articles/PMC4811173/ /pubmed/27042396 http://dx.doi.org/10.7717/peerj.1851 Text en ©2016 Newe http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Drugs and Devices Newe, Axel Dramatyping: a generic algorithm for detecting reasonable temporal correlations between drug administration and lab value alterations |
title | Dramatyping: a generic algorithm for detecting reasonable temporal correlations between drug administration and lab value alterations |
title_full | Dramatyping: a generic algorithm for detecting reasonable temporal correlations between drug administration and lab value alterations |
title_fullStr | Dramatyping: a generic algorithm for detecting reasonable temporal correlations between drug administration and lab value alterations |
title_full_unstemmed | Dramatyping: a generic algorithm for detecting reasonable temporal correlations between drug administration and lab value alterations |
title_short | Dramatyping: a generic algorithm for detecting reasonable temporal correlations between drug administration and lab value alterations |
title_sort | dramatyping: a generic algorithm for detecting reasonable temporal correlations between drug administration and lab value alterations |
topic | Drugs and Devices |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4811173/ https://www.ncbi.nlm.nih.gov/pubmed/27042396 http://dx.doi.org/10.7717/peerj.1851 |
work_keys_str_mv | AT neweaxel dramatypingagenericalgorithmfordetectingreasonabletemporalcorrelationsbetweendrugadministrationandlabvaluealterations |