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Microbial Communities in a High Arctic Polar Desert Landscape
The High Arctic is dominated by polar desert habitats whose microbial communities are poorly understood. In this study, we used next generation sequencing to describe the α- and β-diversity of microbial communities in polar desert soils from the Kongsfjorden region of Svalbard. Ten phyla dominated t...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4814466/ https://www.ncbi.nlm.nih.gov/pubmed/27065980 http://dx.doi.org/10.3389/fmicb.2016.00419 |
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author | McCann, Clare M. Wade, Matthew J. Gray, Neil D. Roberts, Jennifer A. Hubert, Casey R. J. Graham, David W. |
author_facet | McCann, Clare M. Wade, Matthew J. Gray, Neil D. Roberts, Jennifer A. Hubert, Casey R. J. Graham, David W. |
author_sort | McCann, Clare M. |
collection | PubMed |
description | The High Arctic is dominated by polar desert habitats whose microbial communities are poorly understood. In this study, we used next generation sequencing to describe the α- and β-diversity of microbial communities in polar desert soils from the Kongsfjorden region of Svalbard. Ten phyla dominated the soils and accounted for 95% of all sequences, with the Proteobacteria, Actinobacteria, and Chloroflexi being the major lineages. In contrast to previous investigations of Arctic soils, relative Acidobacterial abundances were found to be very low as were the Archaea throughout the Kongsfjorden polar desert landscape. Lower Acidobacterial abundances were attributed to characteristic circumneutral soil pHs in this region, which has resulted from the weathering of underlying carbonate bedrock. In addition, we compared previously measured geochemical conditions as possible controls on soil microbial communities. Phosphorus, pH, nitrogen, and calcium levels all significantly correlated with β-diversity, indicating landscape-scale lithological control of available nutrients, which in turn, significantly influenced soil community composition. In addition, soil phosphorus and pH significantly correlated with α-diversity, particularly with the Shannon diversity and Chao 1 richness indices. |
format | Online Article Text |
id | pubmed-4814466 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-48144662016-04-08 Microbial Communities in a High Arctic Polar Desert Landscape McCann, Clare M. Wade, Matthew J. Gray, Neil D. Roberts, Jennifer A. Hubert, Casey R. J. Graham, David W. Front Microbiol Microbiology The High Arctic is dominated by polar desert habitats whose microbial communities are poorly understood. In this study, we used next generation sequencing to describe the α- and β-diversity of microbial communities in polar desert soils from the Kongsfjorden region of Svalbard. Ten phyla dominated the soils and accounted for 95% of all sequences, with the Proteobacteria, Actinobacteria, and Chloroflexi being the major lineages. In contrast to previous investigations of Arctic soils, relative Acidobacterial abundances were found to be very low as were the Archaea throughout the Kongsfjorden polar desert landscape. Lower Acidobacterial abundances were attributed to characteristic circumneutral soil pHs in this region, which has resulted from the weathering of underlying carbonate bedrock. In addition, we compared previously measured geochemical conditions as possible controls on soil microbial communities. Phosphorus, pH, nitrogen, and calcium levels all significantly correlated with β-diversity, indicating landscape-scale lithological control of available nutrients, which in turn, significantly influenced soil community composition. In addition, soil phosphorus and pH significantly correlated with α-diversity, particularly with the Shannon diversity and Chao 1 richness indices. Frontiers Media S.A. 2016-03-31 /pmc/articles/PMC4814466/ /pubmed/27065980 http://dx.doi.org/10.3389/fmicb.2016.00419 Text en Copyright © 2016 McCann, Wade, Gray, Roberts, Hubert and Graham. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology McCann, Clare M. Wade, Matthew J. Gray, Neil D. Roberts, Jennifer A. Hubert, Casey R. J. Graham, David W. Microbial Communities in a High Arctic Polar Desert Landscape |
title | Microbial Communities in a High Arctic Polar Desert Landscape |
title_full | Microbial Communities in a High Arctic Polar Desert Landscape |
title_fullStr | Microbial Communities in a High Arctic Polar Desert Landscape |
title_full_unstemmed | Microbial Communities in a High Arctic Polar Desert Landscape |
title_short | Microbial Communities in a High Arctic Polar Desert Landscape |
title_sort | microbial communities in a high arctic polar desert landscape |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4814466/ https://www.ncbi.nlm.nih.gov/pubmed/27065980 http://dx.doi.org/10.3389/fmicb.2016.00419 |
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