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Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods
X-ray free-electron lasers generate intense femtosecond X-ray pulses, so that high-resolution structure determination becomes feasible from noncrystalline samples, such as single particles or single molecules. At the moment, the orientation of sample particles cannot be precisely controlled, and con...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4815878/ https://www.ncbi.nlm.nih.gov/pubmed/27047310 http://dx.doi.org/10.1107/S1600576716004337 |
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author | Ma, Shufen Liu, Haiguang |
author_facet | Ma, Shufen Liu, Haiguang |
author_sort | Ma, Shufen |
collection | PubMed |
description | X-ray free-electron lasers generate intense femtosecond X-ray pulses, so that high-resolution structure determination becomes feasible from noncrystalline samples, such as single particles or single molecules. At the moment, the orientation of sample particles cannot be precisely controlled, and consequently the unknown orientation needs to be recovered using computational algorithms. This delays the model reconstruction until all the scattering patterns have been re-oriented, which often entails a long elapse of time and until the completion of the experiment. The scattering patterns from single particles or multiple particles can be summed to form a virtual powder diffraction pattern, and the low-resolution region, corresponding to the small-angle X-ray scattering (SAXS) regime, can be analysed using existing SAXS methods. This work presents a pipeline that converts single-particle data sets into SAXS data, from which real-time model reconstruction is achieved using the model retrieval approach implemented in the software package SASTBX [Liu, Hexemer & Zwart (2012). J. Appl. Cryst.45, 587–593]. To illustrate the applications, two case studies are presented with real experimental data sets collected at the Linac Coherent Light Source. |
format | Online Article Text |
id | pubmed-4815878 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-48158782016-04-04 Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods Ma, Shufen Liu, Haiguang J Appl Crystallogr Computer Programs X-ray free-electron lasers generate intense femtosecond X-ray pulses, so that high-resolution structure determination becomes feasible from noncrystalline samples, such as single particles or single molecules. At the moment, the orientation of sample particles cannot be precisely controlled, and consequently the unknown orientation needs to be recovered using computational algorithms. This delays the model reconstruction until all the scattering patterns have been re-oriented, which often entails a long elapse of time and until the completion of the experiment. The scattering patterns from single particles or multiple particles can be summed to form a virtual powder diffraction pattern, and the low-resolution region, corresponding to the small-angle X-ray scattering (SAXS) regime, can be analysed using existing SAXS methods. This work presents a pipeline that converts single-particle data sets into SAXS data, from which real-time model reconstruction is achieved using the model retrieval approach implemented in the software package SASTBX [Liu, Hexemer & Zwart (2012). J. Appl. Cryst.45, 587–593]. To illustrate the applications, two case studies are presented with real experimental data sets collected at the Linac Coherent Light Source. International Union of Crystallography 2016-03-18 /pmc/articles/PMC4815878/ /pubmed/27047310 http://dx.doi.org/10.1107/S1600576716004337 Text en © Ma and Liu 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Computer Programs Ma, Shufen Liu, Haiguang Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods |
title | Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods
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title_full | Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods
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title_fullStr | Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods
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title_full_unstemmed | Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods
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title_short | Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods
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title_sort | facilitating model reconstruction for single-particle scattering using small-angle x-ray scattering methods |
topic | Computer Programs |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4815878/ https://www.ncbi.nlm.nih.gov/pubmed/27047310 http://dx.doi.org/10.1107/S1600576716004337 |
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