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Data set for transcriptional response to depletion of the Shoc2 scaffolding protein

The Suppressor of Clear, Caenorhabditis elegans Homolog (SHOC2) is a scaffold protein that positively modulates activity of the RAS/ERK1/2 MAP kinase signaling cascade. We set out to understand the ERK1/2 pathway transcriptional response transduced through the SHOC2 scaffolding module. This data art...

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Autores principales: Rouchka, Eric C., Jeoung, Myoungkun, Jang, Eun Ryoung, Liu, Jinpeng, Wang, Chi, Li, Xiaohong, Galperin, Emilia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816878/
https://www.ncbi.nlm.nih.gov/pubmed/27077079
http://dx.doi.org/10.1016/j.dib.2016.03.012
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author Rouchka, Eric C.
Jeoung, Myoungkun
Jang, Eun Ryoung
Liu, Jinpeng
Wang, Chi
Li, Xiaohong
Galperin, Emilia
author_facet Rouchka, Eric C.
Jeoung, Myoungkun
Jang, Eun Ryoung
Liu, Jinpeng
Wang, Chi
Li, Xiaohong
Galperin, Emilia
author_sort Rouchka, Eric C.
collection PubMed
description The Suppressor of Clear, Caenorhabditis elegans Homolog (SHOC2) is a scaffold protein that positively modulates activity of the RAS/ERK1/2 MAP kinase signaling cascade. We set out to understand the ERK1/2 pathway transcriptional response transduced through the SHOC2 scaffolding module. This data article describes raw gene expression within triplicates of kidney fibroblast-like Cos1 cell line expressing non-targeting shRNA (Cos-NT) and triplicates of Cos1 cells depleted of SHOC2 using shRNA (Cos-LV1) upon activation of ERK1/2 pathway by the Epidermal Growth Factor Receptor (EGFR). The data referred here is available in NCBI׳s Gene Expression Omnibus (GEO), accession GEO: GSE67063 as well as NCBI׳s Sequence Read Archive (SRA), accession SRA: SRP056324. A complete analysis of the results can be found in “Shoc2-tranduced ERK1/2 motility signals – Novel insights from functional genomics”(Jeoung et al., 2016) [1].
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spelling pubmed-48168782016-04-13 Data set for transcriptional response to depletion of the Shoc2 scaffolding protein Rouchka, Eric C. Jeoung, Myoungkun Jang, Eun Ryoung Liu, Jinpeng Wang, Chi Li, Xiaohong Galperin, Emilia Data Brief Data Article The Suppressor of Clear, Caenorhabditis elegans Homolog (SHOC2) is a scaffold protein that positively modulates activity of the RAS/ERK1/2 MAP kinase signaling cascade. We set out to understand the ERK1/2 pathway transcriptional response transduced through the SHOC2 scaffolding module. This data article describes raw gene expression within triplicates of kidney fibroblast-like Cos1 cell line expressing non-targeting shRNA (Cos-NT) and triplicates of Cos1 cells depleted of SHOC2 using shRNA (Cos-LV1) upon activation of ERK1/2 pathway by the Epidermal Growth Factor Receptor (EGFR). The data referred here is available in NCBI׳s Gene Expression Omnibus (GEO), accession GEO: GSE67063 as well as NCBI׳s Sequence Read Archive (SRA), accession SRA: SRP056324. A complete analysis of the results can be found in “Shoc2-tranduced ERK1/2 motility signals – Novel insights from functional genomics”(Jeoung et al., 2016) [1]. Elsevier 2016-03-09 /pmc/articles/PMC4816878/ /pubmed/27077079 http://dx.doi.org/10.1016/j.dib.2016.03.012 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Rouchka, Eric C.
Jeoung, Myoungkun
Jang, Eun Ryoung
Liu, Jinpeng
Wang, Chi
Li, Xiaohong
Galperin, Emilia
Data set for transcriptional response to depletion of the Shoc2 scaffolding protein
title Data set for transcriptional response to depletion of the Shoc2 scaffolding protein
title_full Data set for transcriptional response to depletion of the Shoc2 scaffolding protein
title_fullStr Data set for transcriptional response to depletion of the Shoc2 scaffolding protein
title_full_unstemmed Data set for transcriptional response to depletion of the Shoc2 scaffolding protein
title_short Data set for transcriptional response to depletion of the Shoc2 scaffolding protein
title_sort data set for transcriptional response to depletion of the shoc2 scaffolding protein
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816878/
https://www.ncbi.nlm.nih.gov/pubmed/27077079
http://dx.doi.org/10.1016/j.dib.2016.03.012
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