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dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering

Summary: dendextend is an R package for creating and comparing visually appealing tree diagrams. dendextend provides utility functions for manipulating dendrogram objects (their color, shape and content) as well as several advanced methods for comparing trees to one another (both statistically and v...

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Detalles Bibliográficos
Autor principal: Galili, Tal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817050/
https://www.ncbi.nlm.nih.gov/pubmed/26209431
http://dx.doi.org/10.1093/bioinformatics/btv428
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author Galili, Tal
author_facet Galili, Tal
author_sort Galili, Tal
collection PubMed
description Summary: dendextend is an R package for creating and comparing visually appealing tree diagrams. dendextend provides utility functions for manipulating dendrogram objects (their color, shape and content) as well as several advanced methods for comparing trees to one another (both statistically and visually). As such, dendextend offers a flexible framework for enhancing R's rich ecosystem of packages for performing hierarchical clustering of items. Availability and implementation: The dendextend R package (including detailed introductory vignettes) is available under the GPL-2 Open Source license and is freely available to download from CRAN at: (http://cran.r-project.org/package=dendextend) Contact: Tal.Galili@math.tau.ac.il
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spelling pubmed-48170502016-04-04 dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering Galili, Tal Bioinformatics Applications Notes Summary: dendextend is an R package for creating and comparing visually appealing tree diagrams. dendextend provides utility functions for manipulating dendrogram objects (their color, shape and content) as well as several advanced methods for comparing trees to one another (both statistically and visually). As such, dendextend offers a flexible framework for enhancing R's rich ecosystem of packages for performing hierarchical clustering of items. Availability and implementation: The dendextend R package (including detailed introductory vignettes) is available under the GPL-2 Open Source license and is freely available to download from CRAN at: (http://cran.r-project.org/package=dendextend) Contact: Tal.Galili@math.tau.ac.il Oxford University Press 2015-11-15 2015-07-23 /pmc/articles/PMC4817050/ /pubmed/26209431 http://dx.doi.org/10.1093/bioinformatics/btv428 Text en © The Author 2015. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Galili, Tal
dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
title dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
title_full dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
title_fullStr dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
title_full_unstemmed dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
title_short dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
title_sort dendextend: an r package for visualizing, adjusting and comparing trees of hierarchical clustering
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817050/
https://www.ncbi.nlm.nih.gov/pubmed/26209431
http://dx.doi.org/10.1093/bioinformatics/btv428
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