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Comparative transcriptome analyses of seven anurans reveal functions and adaptations of amphibian skin
Animal skin, which is the tissue that directly contacts the external surroundings, has evolved diverse functions to adapt to various environments. Amphibians represent the transitional taxon from aquatic to terrestrial life. Exploring the molecular basis of their skin function and adaptation is impo...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4819189/ https://www.ncbi.nlm.nih.gov/pubmed/27040083 http://dx.doi.org/10.1038/srep24069 |
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author | Huang, Li Li, Jun Anboukaria, Housseni Luo, Zhenhua Zhao, Mian Wu, Hua |
author_facet | Huang, Li Li, Jun Anboukaria, Housseni Luo, Zhenhua Zhao, Mian Wu, Hua |
author_sort | Huang, Li |
collection | PubMed |
description | Animal skin, which is the tissue that directly contacts the external surroundings, has evolved diverse functions to adapt to various environments. Amphibians represent the transitional taxon from aquatic to terrestrial life. Exploring the molecular basis of their skin function and adaptation is important to understand the survival and evolutionary mechanisms of vertebrates. However, comprehensive studies on the molecular mechanisms of skin functions in amphibians are scarce. In this study, we sequenced the skin transcriptomes of seven anurans belonging to three families and compared the similarities and differences in expressed genes and proteins. Unigenes and pathways related to basic biological processes and special functions, such as defense, immunity, and respiration, were enriched in functional annotations. A total of 108 antimicrobial peptides were identified. The highly expressed genes were similar in species of the same family but were different among families. Additionally, the positively selected orthologous groups were involved in biosynthesis, metabolism, immunity, and defense processes. This study is the first to generate extensive transcriptome data for the skin of seven anurans and provides unigenes and pathway candidates for further studies on amphibian skin function and adaptation. |
format | Online Article Text |
id | pubmed-4819189 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-48191892016-04-06 Comparative transcriptome analyses of seven anurans reveal functions and adaptations of amphibian skin Huang, Li Li, Jun Anboukaria, Housseni Luo, Zhenhua Zhao, Mian Wu, Hua Sci Rep Article Animal skin, which is the tissue that directly contacts the external surroundings, has evolved diverse functions to adapt to various environments. Amphibians represent the transitional taxon from aquatic to terrestrial life. Exploring the molecular basis of their skin function and adaptation is important to understand the survival and evolutionary mechanisms of vertebrates. However, comprehensive studies on the molecular mechanisms of skin functions in amphibians are scarce. In this study, we sequenced the skin transcriptomes of seven anurans belonging to three families and compared the similarities and differences in expressed genes and proteins. Unigenes and pathways related to basic biological processes and special functions, such as defense, immunity, and respiration, were enriched in functional annotations. A total of 108 antimicrobial peptides were identified. The highly expressed genes were similar in species of the same family but were different among families. Additionally, the positively selected orthologous groups were involved in biosynthesis, metabolism, immunity, and defense processes. This study is the first to generate extensive transcriptome data for the skin of seven anurans and provides unigenes and pathway candidates for further studies on amphibian skin function and adaptation. Nature Publishing Group 2016-04-04 /pmc/articles/PMC4819189/ /pubmed/27040083 http://dx.doi.org/10.1038/srep24069 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Huang, Li Li, Jun Anboukaria, Housseni Luo, Zhenhua Zhao, Mian Wu, Hua Comparative transcriptome analyses of seven anurans reveal functions and adaptations of amphibian skin |
title | Comparative transcriptome analyses of seven anurans reveal functions and adaptations of amphibian skin |
title_full | Comparative transcriptome analyses of seven anurans reveal functions and adaptations of amphibian skin |
title_fullStr | Comparative transcriptome analyses of seven anurans reveal functions and adaptations of amphibian skin |
title_full_unstemmed | Comparative transcriptome analyses of seven anurans reveal functions and adaptations of amphibian skin |
title_short | Comparative transcriptome analyses of seven anurans reveal functions and adaptations of amphibian skin |
title_sort | comparative transcriptome analyses of seven anurans reveal functions and adaptations of amphibian skin |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4819189/ https://www.ncbi.nlm.nih.gov/pubmed/27040083 http://dx.doi.org/10.1038/srep24069 |
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