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COMADRE: a global data base of animal demography

1. The open‐data scientific philosophy is being widely adopted and proving to promote considerable progress in ecology and evolution. Open‐data global data bases now exist on animal migration, species distribution, conservation status, etc. However, a gap exists for data on population dynamics spann...

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Autores principales: Salguero‐Gómez, Roberto, Jones, Owen R., Archer, C. Ruth, Bein, Christoph, de Buhr, Hendrik, Farack, Claudia, Gottschalk, Fränce, Hartmann, Alexander, Henning, Anne, Hoppe, Gabriel, Römer, Gesa, Ruoff, Tara, Sommer, Veronika, Wille, Julia, Voigt, Jakob, Zeh, Stefan, Vieregg, Dirk, Buckley, Yvonne M., Che‐Castaldo, Judy, Hodgson, David, Scheuerlein, Alexander, Caswell, Hal, Vaupel, James W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4819704/
https://www.ncbi.nlm.nih.gov/pubmed/26814420
http://dx.doi.org/10.1111/1365-2656.12482
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author Salguero‐Gómez, Roberto
Jones, Owen R.
Archer, C. Ruth
Bein, Christoph
de Buhr, Hendrik
Farack, Claudia
Gottschalk, Fränce
Hartmann, Alexander
Henning, Anne
Hoppe, Gabriel
Römer, Gesa
Ruoff, Tara
Sommer, Veronika
Wille, Julia
Voigt, Jakob
Zeh, Stefan
Vieregg, Dirk
Buckley, Yvonne M.
Che‐Castaldo, Judy
Hodgson, David
Scheuerlein, Alexander
Caswell, Hal
Vaupel, James W.
author_facet Salguero‐Gómez, Roberto
Jones, Owen R.
Archer, C. Ruth
Bein, Christoph
de Buhr, Hendrik
Farack, Claudia
Gottschalk, Fränce
Hartmann, Alexander
Henning, Anne
Hoppe, Gabriel
Römer, Gesa
Ruoff, Tara
Sommer, Veronika
Wille, Julia
Voigt, Jakob
Zeh, Stefan
Vieregg, Dirk
Buckley, Yvonne M.
Che‐Castaldo, Judy
Hodgson, David
Scheuerlein, Alexander
Caswell, Hal
Vaupel, James W.
author_sort Salguero‐Gómez, Roberto
collection PubMed
description 1. The open‐data scientific philosophy is being widely adopted and proving to promote considerable progress in ecology and evolution. Open‐data global data bases now exist on animal migration, species distribution, conservation status, etc. However, a gap exists for data on population dynamics spanning the rich diversity of the animal kingdom world‐wide. This information is fundamental to our understanding of the conditions that have shaped variation in animal life histories and their relationships with the environment, as well as the determinants of invasion and extinction. 2. Matrix population models (MPMs) are among the most widely used demographic tools by animal ecologists. MPMs project population dynamics based on the reproduction, survival and development of individuals in a population over their life cycle. The outputs from MPMs have direct biological interpretations, facilitating comparisons among animal species as different as Caenorhabditis elegans, Loxodonta africana and Homo sapiens. 3. Thousands of animal demographic records exist in the form of MPMs, but they are dispersed throughout the literature, rendering comparative analyses difficult. Here, we introduce the COMADRE Animal Matrix Database, an open‐data online repository, which in its version 1.0.0 contains data on 345 species world‐wide, from 402 studies with a total of 1625 population projection matrices. COMADRE also contains ancillary information (e.g. ecoregion, taxonomy, biogeography, etc.) that facilitates interpretation of the numerous demographic metrics that can be derived from its MPMs. We provide R code to some of these examples. 4. Synthesis: We introduce the COMADRE Animal Matrix Database, a resource for animal demography. Its open‐data nature, together with its ancillary information, will facilitate comparative analysis, as will the growing availability of databases focusing on other aspects of the rich animal diversity, and tools to query and combine them. Through future frequent updates of COMADRE, and its integration with other online resources, we encourage animal ecologists to tackle global ecological and evolutionary questions with unprecedented sample size.
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spelling pubmed-48197042016-04-28 COMADRE: a global data base of animal demography Salguero‐Gómez, Roberto Jones, Owen R. Archer, C. Ruth Bein, Christoph de Buhr, Hendrik Farack, Claudia Gottschalk, Fränce Hartmann, Alexander Henning, Anne Hoppe, Gabriel Römer, Gesa Ruoff, Tara Sommer, Veronika Wille, Julia Voigt, Jakob Zeh, Stefan Vieregg, Dirk Buckley, Yvonne M. Che‐Castaldo, Judy Hodgson, David Scheuerlein, Alexander Caswell, Hal Vaupel, James W. J Anim Ecol Review 1. The open‐data scientific philosophy is being widely adopted and proving to promote considerable progress in ecology and evolution. Open‐data global data bases now exist on animal migration, species distribution, conservation status, etc. However, a gap exists for data on population dynamics spanning the rich diversity of the animal kingdom world‐wide. This information is fundamental to our understanding of the conditions that have shaped variation in animal life histories and their relationships with the environment, as well as the determinants of invasion and extinction. 2. Matrix population models (MPMs) are among the most widely used demographic tools by animal ecologists. MPMs project population dynamics based on the reproduction, survival and development of individuals in a population over their life cycle. The outputs from MPMs have direct biological interpretations, facilitating comparisons among animal species as different as Caenorhabditis elegans, Loxodonta africana and Homo sapiens. 3. Thousands of animal demographic records exist in the form of MPMs, but they are dispersed throughout the literature, rendering comparative analyses difficult. Here, we introduce the COMADRE Animal Matrix Database, an open‐data online repository, which in its version 1.0.0 contains data on 345 species world‐wide, from 402 studies with a total of 1625 population projection matrices. COMADRE also contains ancillary information (e.g. ecoregion, taxonomy, biogeography, etc.) that facilitates interpretation of the numerous demographic metrics that can be derived from its MPMs. We provide R code to some of these examples. 4. Synthesis: We introduce the COMADRE Animal Matrix Database, a resource for animal demography. Its open‐data nature, together with its ancillary information, will facilitate comparative analysis, as will the growing availability of databases focusing on other aspects of the rich animal diversity, and tools to query and combine them. Through future frequent updates of COMADRE, and its integration with other online resources, we encourage animal ecologists to tackle global ecological and evolutionary questions with unprecedented sample size. John Wiley and Sons Inc. 2016-01-27 2016-03 /pmc/articles/PMC4819704/ /pubmed/26814420 http://dx.doi.org/10.1111/1365-2656.12482 Text en © 2016 The Authors. Journal of Animal Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review
Salguero‐Gómez, Roberto
Jones, Owen R.
Archer, C. Ruth
Bein, Christoph
de Buhr, Hendrik
Farack, Claudia
Gottschalk, Fränce
Hartmann, Alexander
Henning, Anne
Hoppe, Gabriel
Römer, Gesa
Ruoff, Tara
Sommer, Veronika
Wille, Julia
Voigt, Jakob
Zeh, Stefan
Vieregg, Dirk
Buckley, Yvonne M.
Che‐Castaldo, Judy
Hodgson, David
Scheuerlein, Alexander
Caswell, Hal
Vaupel, James W.
COMADRE: a global data base of animal demography
title COMADRE: a global data base of animal demography
title_full COMADRE: a global data base of animal demography
title_fullStr COMADRE: a global data base of animal demography
title_full_unstemmed COMADRE: a global data base of animal demography
title_short COMADRE: a global data base of animal demography
title_sort comadre: a global data base of animal demography
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4819704/
https://www.ncbi.nlm.nih.gov/pubmed/26814420
http://dx.doi.org/10.1111/1365-2656.12482
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