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Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species
Cold-water corals, similar to tropical corals, contain diverse and complex microbial assemblages. These bacteria provide essential biological functions within coral holobionts, facilitating increased nutrient utilization and production of antimicrobial compounds. To date, few cold-water octocoral sp...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4820459/ https://www.ncbi.nlm.nih.gov/pubmed/27092120 http://dx.doi.org/10.3389/fmicb.2016.00458 |
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author | Lawler, Stephanie N. Kellogg, Christina A. France, Scott C. Clostio, Rachel W. Brooke, Sandra D. Ross, Steve W. |
author_facet | Lawler, Stephanie N. Kellogg, Christina A. France, Scott C. Clostio, Rachel W. Brooke, Sandra D. Ross, Steve W. |
author_sort | Lawler, Stephanie N. |
collection | PubMed |
description | Cold-water corals, similar to tropical corals, contain diverse and complex microbial assemblages. These bacteria provide essential biological functions within coral holobionts, facilitating increased nutrient utilization and production of antimicrobial compounds. To date, few cold-water octocoral species have been analyzed to explore the diversity and abundance of their microbial associates. For this study, 23 samples of the family Anthothelidae were collected from Norfolk (n = 12) and Baltimore Canyons (n = 11) from the western Atlantic in August 2012 and May 2013. Genetic testing found that these samples comprised two Anthothela species (Anthothela grandiflora and Anthothela sp.) and Alcyonium grandiflorum. DNA was extracted and sequenced with primers targeting the V4–V5 variable region of the 16S rRNA gene using 454 pyrosequencing with GS FLX Titanium chemistry. Results demonstrated that the coral host was the primary driver of bacterial community composition. Al. grandiflorum, dominated by Alteromonadales and Pirellulales had much higher species richness, and a distinct bacterial community compared to Anthothela samples. Anthothela species (A. grandiflora and Anthothela sp.) had very similar bacterial communities, dominated by Oceanospirillales and Spirochaetes. Additional analysis of core-conserved bacteria at 90% sample coverage revealed genus level conservation across Anthothela samples. This core included unclassified Oceanospirillales, Kiloniellales, Campylobacterales, and genus Spirochaeta. Members of this core were previously recognized for their functional capabilities in nitrogen cycling and suggest the possibility of a nearly complete nitrogen cycle within Anthothela species. Overall, many of the bacterial associates identified in this study have the potential to contribute to the acquisition and cycling of nutrients within the coral holobiont. |
format | Online Article Text |
id | pubmed-4820459 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-48204592016-04-18 Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species Lawler, Stephanie N. Kellogg, Christina A. France, Scott C. Clostio, Rachel W. Brooke, Sandra D. Ross, Steve W. Front Microbiol Microbiology Cold-water corals, similar to tropical corals, contain diverse and complex microbial assemblages. These bacteria provide essential biological functions within coral holobionts, facilitating increased nutrient utilization and production of antimicrobial compounds. To date, few cold-water octocoral species have been analyzed to explore the diversity and abundance of their microbial associates. For this study, 23 samples of the family Anthothelidae were collected from Norfolk (n = 12) and Baltimore Canyons (n = 11) from the western Atlantic in August 2012 and May 2013. Genetic testing found that these samples comprised two Anthothela species (Anthothela grandiflora and Anthothela sp.) and Alcyonium grandiflorum. DNA was extracted and sequenced with primers targeting the V4–V5 variable region of the 16S rRNA gene using 454 pyrosequencing with GS FLX Titanium chemistry. Results demonstrated that the coral host was the primary driver of bacterial community composition. Al. grandiflorum, dominated by Alteromonadales and Pirellulales had much higher species richness, and a distinct bacterial community compared to Anthothela samples. Anthothela species (A. grandiflora and Anthothela sp.) had very similar bacterial communities, dominated by Oceanospirillales and Spirochaetes. Additional analysis of core-conserved bacteria at 90% sample coverage revealed genus level conservation across Anthothela samples. This core included unclassified Oceanospirillales, Kiloniellales, Campylobacterales, and genus Spirochaeta. Members of this core were previously recognized for their functional capabilities in nitrogen cycling and suggest the possibility of a nearly complete nitrogen cycle within Anthothela species. Overall, many of the bacterial associates identified in this study have the potential to contribute to the acquisition and cycling of nutrients within the coral holobiont. Frontiers Media S.A. 2016-04-05 /pmc/articles/PMC4820459/ /pubmed/27092120 http://dx.doi.org/10.3389/fmicb.2016.00458 Text en Copyright © 2016 Lawler, Kellogg, France, Clostio, Brooke and Ross. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Lawler, Stephanie N. Kellogg, Christina A. France, Scott C. Clostio, Rachel W. Brooke, Sandra D. Ross, Steve W. Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species |
title | Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species |
title_full | Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species |
title_fullStr | Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species |
title_full_unstemmed | Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species |
title_short | Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species |
title_sort | coral-associated bacterial diversity is conserved across two deep-sea anthothela species |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4820459/ https://www.ncbi.nlm.nih.gov/pubmed/27092120 http://dx.doi.org/10.3389/fmicb.2016.00458 |
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