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The Analysis Portal and the Swedish LifeWatch e-infrastructure for biodiversity research

Abstract. BACKGROUND: During the last years, more and more online portals were generated and are now available for ecologists to run advanced models with extensive data sets. Some examples are the Biodiversity Virtual e-Laboratory (BioVel) Portal (https://portal.biovel.eu) for ecological niche model...

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Detalles Bibliográficos
Autores principales: Leidenberger, Sonja, Käck, Martin, Karlsson, Björn, Kindvall, Oskar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4822057/
https://www.ncbi.nlm.nih.gov/pubmed/27099553
http://dx.doi.org/10.3897/BDJ.4.e7644
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author Leidenberger, Sonja
Käck, Martin
Karlsson, Björn
Kindvall, Oskar
author_facet Leidenberger, Sonja
Käck, Martin
Karlsson, Björn
Kindvall, Oskar
author_sort Leidenberger, Sonja
collection PubMed
description Abstract. BACKGROUND: During the last years, more and more online portals were generated and are now available for ecologists to run advanced models with extensive data sets. Some examples are the Biodiversity Virtual e-Laboratory (BioVel) Portal (https://portal.biovel.eu) for ecological niche modelling and the Mobyle SNAP Workbench (https://snap.hpc.ncsu.edu) for evolutionary and population genetics analysis. Such portals have the main goal to facilitate the run of advanced models, through access to large-capacity computers or servers. In this study, we present the Analysis Portal (www.analysisportal.se), which is a part of the Swedish LifeWatch e-infrastructure for biodiversity research that combines a variety of Swedish web services to perform different kinds of dataprocessing. NEW INFORMATION: For the first time, the Swedish Analysis Portal for integrated analysis of species occurrence data is described in detail. It was launched in 2013 and today, over 60 Million Swedish species observation records can be assessed, visualized and analyzed via the portal. Datasets can be assembled using sophisticated filtering tools, and combined with environmental and climatic data from a wide range of providers. Different validation tools, for example the official Swedish taxon concept database Dyntaxa, ensure high data quality. Results can be downloaded in different formats as maps, tables, diagrams and reports.
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spelling pubmed-48220572016-04-20 The Analysis Portal and the Swedish LifeWatch e-infrastructure for biodiversity research Leidenberger, Sonja Käck, Martin Karlsson, Björn Kindvall, Oskar Biodivers Data J Software Description Abstract. BACKGROUND: During the last years, more and more online portals were generated and are now available for ecologists to run advanced models with extensive data sets. Some examples are the Biodiversity Virtual e-Laboratory (BioVel) Portal (https://portal.biovel.eu) for ecological niche modelling and the Mobyle SNAP Workbench (https://snap.hpc.ncsu.edu) for evolutionary and population genetics analysis. Such portals have the main goal to facilitate the run of advanced models, through access to large-capacity computers or servers. In this study, we present the Analysis Portal (www.analysisportal.se), which is a part of the Swedish LifeWatch e-infrastructure for biodiversity research that combines a variety of Swedish web services to perform different kinds of dataprocessing. NEW INFORMATION: For the first time, the Swedish Analysis Portal for integrated analysis of species occurrence data is described in detail. It was launched in 2013 and today, over 60 Million Swedish species observation records can be assessed, visualized and analyzed via the portal. Datasets can be assembled using sophisticated filtering tools, and combined with environmental and climatic data from a wide range of providers. Different validation tools, for example the official Swedish taxon concept database Dyntaxa, ensure high data quality. Results can be downloaded in different formats as maps, tables, diagrams and reports. Pensoft Publishers 2016-03-23 /pmc/articles/PMC4822057/ /pubmed/27099553 http://dx.doi.org/10.3897/BDJ.4.e7644 Text en Sonja Leidenberger, Martin Käck, Björn Karlsson, Oskar Kindvall http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Software Description
Leidenberger, Sonja
Käck, Martin
Karlsson, Björn
Kindvall, Oskar
The Analysis Portal and the Swedish LifeWatch e-infrastructure for biodiversity research
title The Analysis Portal and the Swedish LifeWatch e-infrastructure for biodiversity research
title_full The Analysis Portal and the Swedish LifeWatch e-infrastructure for biodiversity research
title_fullStr The Analysis Portal and the Swedish LifeWatch e-infrastructure for biodiversity research
title_full_unstemmed The Analysis Portal and the Swedish LifeWatch e-infrastructure for biodiversity research
title_short The Analysis Portal and the Swedish LifeWatch e-infrastructure for biodiversity research
title_sort analysis portal and the swedish lifewatch e-infrastructure for biodiversity research
topic Software Description
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4822057/
https://www.ncbi.nlm.nih.gov/pubmed/27099553
http://dx.doi.org/10.3897/BDJ.4.e7644
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