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A glance at the applications of Singular Spectrum Analysis in gene expression data

In recent years Singular Spectrum Analysis (SSA) has been used to solve many biomedical issues and is currently accepted as a potential technique in quantitative genetics studies. Presented in this article is a review of recent published genetics studies which have taken advantage of SSA. Since Sing...

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Detalles Bibliográficos
Autores principales: Hassani, Hossein, Ghodsi, Zara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4822218/
https://www.ncbi.nlm.nih.gov/pubmed/27077034
http://dx.doi.org/10.1016/j.bdq.2015.04.001
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author Hassani, Hossein
Ghodsi, Zara
author_facet Hassani, Hossein
Ghodsi, Zara
author_sort Hassani, Hossein
collection PubMed
description In recent years Singular Spectrum Analysis (SSA) has been used to solve many biomedical issues and is currently accepted as a potential technique in quantitative genetics studies. Presented in this article is a review of recent published genetics studies which have taken advantage of SSA. Since Singular Value Decomposition (SVD) is an important stage of this technique which can also be used as an independent analytical method in gene expression data, we also briefly touch upon some areas of the application of SVD. The review finds that at present, the most prominent area of applying SSA in genetics is filtering and signal extraction, which proves that SSA can be considered as a valuable aid and promising method for genetics analysis.
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spelling pubmed-48222182016-04-13 A glance at the applications of Singular Spectrum Analysis in gene expression data Hassani, Hossein Ghodsi, Zara Biomol Detect Quantif Review Article In recent years Singular Spectrum Analysis (SSA) has been used to solve many biomedical issues and is currently accepted as a potential technique in quantitative genetics studies. Presented in this article is a review of recent published genetics studies which have taken advantage of SSA. Since Singular Value Decomposition (SVD) is an important stage of this technique which can also be used as an independent analytical method in gene expression data, we also briefly touch upon some areas of the application of SVD. The review finds that at present, the most prominent area of applying SSA in genetics is filtering and signal extraction, which proves that SSA can be considered as a valuable aid and promising method for genetics analysis. Elsevier 2015-05-29 /pmc/articles/PMC4822218/ /pubmed/27077034 http://dx.doi.org/10.1016/j.bdq.2015.04.001 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review Article
Hassani, Hossein
Ghodsi, Zara
A glance at the applications of Singular Spectrum Analysis in gene expression data
title A glance at the applications of Singular Spectrum Analysis in gene expression data
title_full A glance at the applications of Singular Spectrum Analysis in gene expression data
title_fullStr A glance at the applications of Singular Spectrum Analysis in gene expression data
title_full_unstemmed A glance at the applications of Singular Spectrum Analysis in gene expression data
title_short A glance at the applications of Singular Spectrum Analysis in gene expression data
title_sort glance at the applications of singular spectrum analysis in gene expression data
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4822218/
https://www.ncbi.nlm.nih.gov/pubmed/27077034
http://dx.doi.org/10.1016/j.bdq.2015.04.001
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