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A glance at the applications of Singular Spectrum Analysis in gene expression data
In recent years Singular Spectrum Analysis (SSA) has been used to solve many biomedical issues and is currently accepted as a potential technique in quantitative genetics studies. Presented in this article is a review of recent published genetics studies which have taken advantage of SSA. Since Sing...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4822218/ https://www.ncbi.nlm.nih.gov/pubmed/27077034 http://dx.doi.org/10.1016/j.bdq.2015.04.001 |
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author | Hassani, Hossein Ghodsi, Zara |
author_facet | Hassani, Hossein Ghodsi, Zara |
author_sort | Hassani, Hossein |
collection | PubMed |
description | In recent years Singular Spectrum Analysis (SSA) has been used to solve many biomedical issues and is currently accepted as a potential technique in quantitative genetics studies. Presented in this article is a review of recent published genetics studies which have taken advantage of SSA. Since Singular Value Decomposition (SVD) is an important stage of this technique which can also be used as an independent analytical method in gene expression data, we also briefly touch upon some areas of the application of SVD. The review finds that at present, the most prominent area of applying SSA in genetics is filtering and signal extraction, which proves that SSA can be considered as a valuable aid and promising method for genetics analysis. |
format | Online Article Text |
id | pubmed-4822218 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-48222182016-04-13 A glance at the applications of Singular Spectrum Analysis in gene expression data Hassani, Hossein Ghodsi, Zara Biomol Detect Quantif Review Article In recent years Singular Spectrum Analysis (SSA) has been used to solve many biomedical issues and is currently accepted as a potential technique in quantitative genetics studies. Presented in this article is a review of recent published genetics studies which have taken advantage of SSA. Since Singular Value Decomposition (SVD) is an important stage of this technique which can also be used as an independent analytical method in gene expression data, we also briefly touch upon some areas of the application of SVD. The review finds that at present, the most prominent area of applying SSA in genetics is filtering and signal extraction, which proves that SSA can be considered as a valuable aid and promising method for genetics analysis. Elsevier 2015-05-29 /pmc/articles/PMC4822218/ /pubmed/27077034 http://dx.doi.org/10.1016/j.bdq.2015.04.001 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Article Hassani, Hossein Ghodsi, Zara A glance at the applications of Singular Spectrum Analysis in gene expression data |
title | A glance at the applications of Singular Spectrum Analysis in gene expression data |
title_full | A glance at the applications of Singular Spectrum Analysis in gene expression data |
title_fullStr | A glance at the applications of Singular Spectrum Analysis in gene expression data |
title_full_unstemmed | A glance at the applications of Singular Spectrum Analysis in gene expression data |
title_short | A glance at the applications of Singular Spectrum Analysis in gene expression data |
title_sort | glance at the applications of singular spectrum analysis in gene expression data |
topic | Review Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4822218/ https://www.ncbi.nlm.nih.gov/pubmed/27077034 http://dx.doi.org/10.1016/j.bdq.2015.04.001 |
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