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The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development
The drug-minded protein interaction database (DrumPID) has been designed to provide fast, tailored information on drugs and their protein networks including indications, protein targets and side-targets. Starting queries include compound, target and protein interactions and organism-specific protein...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4823820/ https://www.ncbi.nlm.nih.gov/pubmed/27055828 http://dx.doi.org/10.1093/database/baw041 |
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author | Kunz, Meik Liang, Chunguang Nilla, Santosh Cecil, Alexander Dandekar, Thomas |
author_facet | Kunz, Meik Liang, Chunguang Nilla, Santosh Cecil, Alexander Dandekar, Thomas |
author_sort | Kunz, Meik |
collection | PubMed |
description | The drug-minded protein interaction database (DrumPID) has been designed to provide fast, tailored information on drugs and their protein networks including indications, protein targets and side-targets. Starting queries include compound, target and protein interactions and organism-specific protein families. Furthermore, drug name, chemical structures and their SMILES notation, affected proteins (potential drug targets), organisms as well as diseases can be queried including various combinations and refinement of searches. Drugs and protein interactions are analyzed in detail with reference to protein structures and catalytic domains, related compound structures as well as potential targets in other organisms. DrumPID considers drug functionality, compound similarity, target structure, interactome analysis and organismic range for a compound, useful for drug development, predicting drug side-effects and structure–activity relationships. Database URL: http://drumpid.bioapps.biozentrum.uni-wuerzburg.de |
format | Online Article Text |
id | pubmed-4823820 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-48238202016-04-08 The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development Kunz, Meik Liang, Chunguang Nilla, Santosh Cecil, Alexander Dandekar, Thomas Database (Oxford) Database Tool The drug-minded protein interaction database (DrumPID) has been designed to provide fast, tailored information on drugs and their protein networks including indications, protein targets and side-targets. Starting queries include compound, target and protein interactions and organism-specific protein families. Furthermore, drug name, chemical structures and their SMILES notation, affected proteins (potential drug targets), organisms as well as diseases can be queried including various combinations and refinement of searches. Drugs and protein interactions are analyzed in detail with reference to protein structures and catalytic domains, related compound structures as well as potential targets in other organisms. DrumPID considers drug functionality, compound similarity, target structure, interactome analysis and organismic range for a compound, useful for drug development, predicting drug side-effects and structure–activity relationships. Database URL: http://drumpid.bioapps.biozentrum.uni-wuerzburg.de Oxford University Press 2016-04-06 /pmc/articles/PMC4823820/ /pubmed/27055828 http://dx.doi.org/10.1093/database/baw041 Text en © The Author(s) 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Tool Kunz, Meik Liang, Chunguang Nilla, Santosh Cecil, Alexander Dandekar, Thomas The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development |
title | The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development |
title_full | The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development |
title_fullStr | The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development |
title_full_unstemmed | The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development |
title_short | The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development |
title_sort | drug-minded protein interaction database (drumpid) for efficient target analysis and drug development |
topic | Database Tool |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4823820/ https://www.ncbi.nlm.nih.gov/pubmed/27055828 http://dx.doi.org/10.1093/database/baw041 |
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