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The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development

The drug-minded protein interaction database (DrumPID) has been designed to provide fast, tailored information on drugs and their protein networks including indications, protein targets and side-targets. Starting queries include compound, target and protein interactions and organism-specific protein...

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Detalles Bibliográficos
Autores principales: Kunz, Meik, Liang, Chunguang, Nilla, Santosh, Cecil, Alexander, Dandekar, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4823820/
https://www.ncbi.nlm.nih.gov/pubmed/27055828
http://dx.doi.org/10.1093/database/baw041
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author Kunz, Meik
Liang, Chunguang
Nilla, Santosh
Cecil, Alexander
Dandekar, Thomas
author_facet Kunz, Meik
Liang, Chunguang
Nilla, Santosh
Cecil, Alexander
Dandekar, Thomas
author_sort Kunz, Meik
collection PubMed
description The drug-minded protein interaction database (DrumPID) has been designed to provide fast, tailored information on drugs and their protein networks including indications, protein targets and side-targets. Starting queries include compound, target and protein interactions and organism-specific protein families. Furthermore, drug name, chemical structures and their SMILES notation, affected proteins (potential drug targets), organisms as well as diseases can be queried including various combinations and refinement of searches. Drugs and protein interactions are analyzed in detail with reference to protein structures and catalytic domains, related compound structures as well as potential targets in other organisms. DrumPID considers drug functionality, compound similarity, target structure, interactome analysis and organismic range for a compound, useful for drug development, predicting drug side-effects and structure–activity relationships. Database URL: http://drumpid.bioapps.biozentrum.uni-wuerzburg.de
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spelling pubmed-48238202016-04-08 The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development Kunz, Meik Liang, Chunguang Nilla, Santosh Cecil, Alexander Dandekar, Thomas Database (Oxford) Database Tool The drug-minded protein interaction database (DrumPID) has been designed to provide fast, tailored information on drugs and their protein networks including indications, protein targets and side-targets. Starting queries include compound, target and protein interactions and organism-specific protein families. Furthermore, drug name, chemical structures and their SMILES notation, affected proteins (potential drug targets), organisms as well as diseases can be queried including various combinations and refinement of searches. Drugs and protein interactions are analyzed in detail with reference to protein structures and catalytic domains, related compound structures as well as potential targets in other organisms. DrumPID considers drug functionality, compound similarity, target structure, interactome analysis and organismic range for a compound, useful for drug development, predicting drug side-effects and structure–activity relationships. Database URL: http://drumpid.bioapps.biozentrum.uni-wuerzburg.de Oxford University Press 2016-04-06 /pmc/articles/PMC4823820/ /pubmed/27055828 http://dx.doi.org/10.1093/database/baw041 Text en © The Author(s) 2016. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Kunz, Meik
Liang, Chunguang
Nilla, Santosh
Cecil, Alexander
Dandekar, Thomas
The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development
title The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development
title_full The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development
title_fullStr The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development
title_full_unstemmed The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development
title_short The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development
title_sort drug-minded protein interaction database (drumpid) for efficient target analysis and drug development
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4823820/
https://www.ncbi.nlm.nih.gov/pubmed/27055828
http://dx.doi.org/10.1093/database/baw041
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