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The effect of the dispersal kernel on isolation-by-distance in a continuous population
Under models of isolation-by-distance, population structure is determined by the probability of identity-by-descent between pairs of genes according to the geographic distance between them. Well established analytical results indicate that the relationship between geographical and genetic distance d...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824897/ https://www.ncbi.nlm.nih.gov/pubmed/27069794 http://dx.doi.org/10.7717/peerj.1848 |
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author | Furstenau, Tara N. Cartwright, Reed A. |
author_facet | Furstenau, Tara N. Cartwright, Reed A. |
author_sort | Furstenau, Tara N. |
collection | PubMed |
description | Under models of isolation-by-distance, population structure is determined by the probability of identity-by-descent between pairs of genes according to the geographic distance between them. Well established analytical results indicate that the relationship between geographical and genetic distance depends mostly on the neighborhood size of the population which represents a standardized measure of gene flow. To test this prediction, we model local dispersal of haploid individuals on a two-dimensional landscape using seven dispersal kernels: Rayleigh, exponential, half-normal, triangular, gamma, Lomax and Pareto. When neighborhood size is held constant, the distributions produce similar patterns of isolation-by-distance, confirming predictions. Considering this, we propose that the triangular distribution is the appropriate null distribution for isolation-by-distance studies. Under the triangular distribution, dispersal is uniform over the neighborhood area which suggests that the common description of neighborhood size as a measure of an effective, local panmictic population is valid for popular families of dispersal distributions. We further show how to draw random variables from the triangular distribution efficiently and argue that it should be utilized in other studies in which computational efficiency is important. |
format | Online Article Text |
id | pubmed-4824897 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-48248972016-04-11 The effect of the dispersal kernel on isolation-by-distance in a continuous population Furstenau, Tara N. Cartwright, Reed A. PeerJ Computational Biology Under models of isolation-by-distance, population structure is determined by the probability of identity-by-descent between pairs of genes according to the geographic distance between them. Well established analytical results indicate that the relationship between geographical and genetic distance depends mostly on the neighborhood size of the population which represents a standardized measure of gene flow. To test this prediction, we model local dispersal of haploid individuals on a two-dimensional landscape using seven dispersal kernels: Rayleigh, exponential, half-normal, triangular, gamma, Lomax and Pareto. When neighborhood size is held constant, the distributions produce similar patterns of isolation-by-distance, confirming predictions. Considering this, we propose that the triangular distribution is the appropriate null distribution for isolation-by-distance studies. Under the triangular distribution, dispersal is uniform over the neighborhood area which suggests that the common description of neighborhood size as a measure of an effective, local panmictic population is valid for popular families of dispersal distributions. We further show how to draw random variables from the triangular distribution efficiently and argue that it should be utilized in other studies in which computational efficiency is important. PeerJ Inc. 2016-03-29 /pmc/articles/PMC4824897/ /pubmed/27069794 http://dx.doi.org/10.7717/peerj.1848 Text en ©2016 Furstenau and Cartwright http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Computational Biology Furstenau, Tara N. Cartwright, Reed A. The effect of the dispersal kernel on isolation-by-distance in a continuous population |
title | The effect of the dispersal kernel on isolation-by-distance in a continuous population |
title_full | The effect of the dispersal kernel on isolation-by-distance in a continuous population |
title_fullStr | The effect of the dispersal kernel on isolation-by-distance in a continuous population |
title_full_unstemmed | The effect of the dispersal kernel on isolation-by-distance in a continuous population |
title_short | The effect of the dispersal kernel on isolation-by-distance in a continuous population |
title_sort | effect of the dispersal kernel on isolation-by-distance in a continuous population |
topic | Computational Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824897/ https://www.ncbi.nlm.nih.gov/pubmed/27069794 http://dx.doi.org/10.7717/peerj.1848 |
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