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Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations

[Image: see text] This article presents a new method to compute matrices from numerical simulations based on the ideas of sparse sampling and compressed sensing. The method is useful for problems where the determination of the entries of a matrix constitutes the computational bottleneck. We apply th...

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Autores principales: Sanders, Jacob N., Andrade, Xavier, Aspuru-Guzik, Alán
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2015
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4827532/
https://www.ncbi.nlm.nih.gov/pubmed/27162943
http://dx.doi.org/10.1021/oc5000404
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author Sanders, Jacob N.
Andrade, Xavier
Aspuru-Guzik, Alán
author_facet Sanders, Jacob N.
Andrade, Xavier
Aspuru-Guzik, Alán
author_sort Sanders, Jacob N.
collection PubMed
description [Image: see text] This article presents a new method to compute matrices from numerical simulations based on the ideas of sparse sampling and compressed sensing. The method is useful for problems where the determination of the entries of a matrix constitutes the computational bottleneck. We apply this new method to an important problem in computational chemistry: the determination of molecular vibrations from electronic structure calculations, where our results show that the overall scaling of the procedure can be improved in some cases. Moreover, our method provides a general framework for bootstrapping cheap low-accuracy calculations in order to reduce the required number of expensive high-accuracy calculations, resulting in a significant 3× speed-up in actual calculations.
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spelling pubmed-48275322016-05-09 Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations Sanders, Jacob N. Andrade, Xavier Aspuru-Guzik, Alán ACS Cent Sci [Image: see text] This article presents a new method to compute matrices from numerical simulations based on the ideas of sparse sampling and compressed sensing. The method is useful for problems where the determination of the entries of a matrix constitutes the computational bottleneck. We apply this new method to an important problem in computational chemistry: the determination of molecular vibrations from electronic structure calculations, where our results show that the overall scaling of the procedure can be improved in some cases. Moreover, our method provides a general framework for bootstrapping cheap low-accuracy calculations in order to reduce the required number of expensive high-accuracy calculations, resulting in a significant 3× speed-up in actual calculations. American Chemical Society 2015-03-23 2015-03-25 /pmc/articles/PMC4827532/ /pubmed/27162943 http://dx.doi.org/10.1021/oc5000404 Text en Copyright © 2015 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Sanders, Jacob N.
Andrade, Xavier
Aspuru-Guzik, Alán
Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations
title Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations
title_full Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations
title_fullStr Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations
title_full_unstemmed Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations
title_short Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations
title_sort compressed sensing for the fast computation of matrices: application to molecular vibrations
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4827532/
https://www.ncbi.nlm.nih.gov/pubmed/27162943
http://dx.doi.org/10.1021/oc5000404
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