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Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations
[Image: see text] This article presents a new method to compute matrices from numerical simulations based on the ideas of sparse sampling and compressed sensing. The method is useful for problems where the determination of the entries of a matrix constitutes the computational bottleneck. We apply th...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2015
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4827532/ https://www.ncbi.nlm.nih.gov/pubmed/27162943 http://dx.doi.org/10.1021/oc5000404 |
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author | Sanders, Jacob N. Andrade, Xavier Aspuru-Guzik, Alán |
author_facet | Sanders, Jacob N. Andrade, Xavier Aspuru-Guzik, Alán |
author_sort | Sanders, Jacob N. |
collection | PubMed |
description | [Image: see text] This article presents a new method to compute matrices from numerical simulations based on the ideas of sparse sampling and compressed sensing. The method is useful for problems where the determination of the entries of a matrix constitutes the computational bottleneck. We apply this new method to an important problem in computational chemistry: the determination of molecular vibrations from electronic structure calculations, where our results show that the overall scaling of the procedure can be improved in some cases. Moreover, our method provides a general framework for bootstrapping cheap low-accuracy calculations in order to reduce the required number of expensive high-accuracy calculations, resulting in a significant 3× speed-up in actual calculations. |
format | Online Article Text |
id | pubmed-4827532 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-48275322016-05-09 Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations Sanders, Jacob N. Andrade, Xavier Aspuru-Guzik, Alán ACS Cent Sci [Image: see text] This article presents a new method to compute matrices from numerical simulations based on the ideas of sparse sampling and compressed sensing. The method is useful for problems where the determination of the entries of a matrix constitutes the computational bottleneck. We apply this new method to an important problem in computational chemistry: the determination of molecular vibrations from electronic structure calculations, where our results show that the overall scaling of the procedure can be improved in some cases. Moreover, our method provides a general framework for bootstrapping cheap low-accuracy calculations in order to reduce the required number of expensive high-accuracy calculations, resulting in a significant 3× speed-up in actual calculations. American Chemical Society 2015-03-23 2015-03-25 /pmc/articles/PMC4827532/ /pubmed/27162943 http://dx.doi.org/10.1021/oc5000404 Text en Copyright © 2015 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Sanders, Jacob N. Andrade, Xavier Aspuru-Guzik, Alán Compressed Sensing for the Fast Computation of Matrices: Application to Molecular Vibrations |
title | Compressed
Sensing for the Fast Computation of Matrices:
Application to Molecular Vibrations |
title_full | Compressed
Sensing for the Fast Computation of Matrices:
Application to Molecular Vibrations |
title_fullStr | Compressed
Sensing for the Fast Computation of Matrices:
Application to Molecular Vibrations |
title_full_unstemmed | Compressed
Sensing for the Fast Computation of Matrices:
Application to Molecular Vibrations |
title_short | Compressed
Sensing for the Fast Computation of Matrices:
Application to Molecular Vibrations |
title_sort | compressed
sensing for the fast computation of matrices:
application to molecular vibrations |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4827532/ https://www.ncbi.nlm.nih.gov/pubmed/27162943 http://dx.doi.org/10.1021/oc5000404 |
work_keys_str_mv | AT sandersjacobn compressedsensingforthefastcomputationofmatricesapplicationtomolecularvibrations AT andradexavier compressedsensingforthefastcomputationofmatricesapplicationtomolecularvibrations AT aspuruguzikalan compressedsensingforthefastcomputationofmatricesapplicationtomolecularvibrations |