MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation

MyPro is a software pipeline for high-quality prokaryotic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual machine and supported by updated databases will enable biologists to perform...

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Detalles Bibliográficos
Autores principales: Liao, Yu-Chieh, Lin, Hsin-Hung, Sabharwal, Amarpreet, Haase, Elaine M., Scannapieco, Frank A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2015
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4828917/
https://www.ncbi.nlm.nih.gov/pubmed/25911337
http://dx.doi.org/10.1016/j.mimet.2015.04.006
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author Liao, Yu-Chieh
Lin, Hsin-Hung
Sabharwal, Amarpreet
Haase, Elaine M.
Scannapieco, Frank A.
author_facet Liao, Yu-Chieh
Lin, Hsin-Hung
Sabharwal, Amarpreet
Haase, Elaine M.
Scannapieco, Frank A.
author_sort Liao, Yu-Chieh
collection PubMed
description MyPro is a software pipeline for high-quality prokaryotic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual machine and supported by updated databases will enable biologists to perform quality prokaryotic genome assembly and annotation with ease.
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spelling pubmed-48289172016-04-12 MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation Liao, Yu-Chieh Lin, Hsin-Hung Sabharwal, Amarpreet Haase, Elaine M. Scannapieco, Frank A. J Microbiol Methods Article MyPro is a software pipeline for high-quality prokaryotic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual machine and supported by updated databases will enable biologists to perform quality prokaryotic genome assembly and annotation with ease. 2015-04-21 2015-06 /pmc/articles/PMC4828917/ /pubmed/25911337 http://dx.doi.org/10.1016/j.mimet.2015.04.006 Text en This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Liao, Yu-Chieh
Lin, Hsin-Hung
Sabharwal, Amarpreet
Haase, Elaine M.
Scannapieco, Frank A.
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
title MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
title_full MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
title_fullStr MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
title_full_unstemmed MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
title_short MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
title_sort mypro: a seamless pipeline for automated prokaryotic genome assembly and annotation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4828917/
https://www.ncbi.nlm.nih.gov/pubmed/25911337
http://dx.doi.org/10.1016/j.mimet.2015.04.006
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