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X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex

Serial femtosecond X-ray crystallography (SFX) using an X-ray free electron laser (XFEL) is a recent advancement in structural biology for solving crystal structures of challenging membrane proteins, including G-protein coupled receptors (GPCRs), which often only produce microcrystals. An XFEL deliv...

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Autores principales: Zhou, X. Edward, Gao, Xiang, Barty, Anton, Kang, Yanyong, He, Yuanzheng, Liu, Wei, Ishchenko, Andrii, White, Thomas A., Yefanov, Oleksandr, Han, Gye Won, Xu, Qingping, de Waal, Parker W., Suino-Powell, Kelly M., Boutet, Sébastien, Williams, Garth J., Wang, Meitian, Li, Dianfan, Caffrey, Martin, Chapman, Henry N., Spence, John C.H., Fromme, Petra, Weierstall, Uwe, Stevens, Raymond C., Cherezov, Vadim, Melcher, Karsten, Xu, H. Eric
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4828943/
https://www.ncbi.nlm.nih.gov/pubmed/27070998
http://dx.doi.org/10.1038/sdata.2016.21
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author Zhou, X. Edward
Gao, Xiang
Barty, Anton
Kang, Yanyong
He, Yuanzheng
Liu, Wei
Ishchenko, Andrii
White, Thomas A.
Yefanov, Oleksandr
Han, Gye Won
Xu, Qingping
de Waal, Parker W.
Suino-Powell, Kelly M.
Boutet, Sébastien
Williams, Garth J.
Wang, Meitian
Li, Dianfan
Caffrey, Martin
Chapman, Henry N.
Spence, John C.H.
Fromme, Petra
Weierstall, Uwe
Stevens, Raymond C.
Cherezov, Vadim
Melcher, Karsten
Xu, H. Eric
author_facet Zhou, X. Edward
Gao, Xiang
Barty, Anton
Kang, Yanyong
He, Yuanzheng
Liu, Wei
Ishchenko, Andrii
White, Thomas A.
Yefanov, Oleksandr
Han, Gye Won
Xu, Qingping
de Waal, Parker W.
Suino-Powell, Kelly M.
Boutet, Sébastien
Williams, Garth J.
Wang, Meitian
Li, Dianfan
Caffrey, Martin
Chapman, Henry N.
Spence, John C.H.
Fromme, Petra
Weierstall, Uwe
Stevens, Raymond C.
Cherezov, Vadim
Melcher, Karsten
Xu, H. Eric
author_sort Zhou, X. Edward
collection PubMed
description Serial femtosecond X-ray crystallography (SFX) using an X-ray free electron laser (XFEL) is a recent advancement in structural biology for solving crystal structures of challenging membrane proteins, including G-protein coupled receptors (GPCRs), which often only produce microcrystals. An XFEL delivers highly intense X-ray pulses of femtosecond duration short enough to enable the collection of single diffraction images before significant radiation damage to crystals sets in. Here we report the deposition of the XFEL data and provide further details on crystallization, XFEL data collection and analysis, structure determination, and the validation of the structural model. The rhodopsin-arrestin crystal structure solved with SFX represents the first near-atomic resolution structure of a GPCR-arrestin complex, provides structural insights into understanding of arrestin-mediated GPCR signaling, and demonstrates the great potential of this SFX-XFEL technology for accelerating crystal structure determination of challenging proteins and protein complexes.
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spelling pubmed-48289432016-04-28 X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex Zhou, X. Edward Gao, Xiang Barty, Anton Kang, Yanyong He, Yuanzheng Liu, Wei Ishchenko, Andrii White, Thomas A. Yefanov, Oleksandr Han, Gye Won Xu, Qingping de Waal, Parker W. Suino-Powell, Kelly M. Boutet, Sébastien Williams, Garth J. Wang, Meitian Li, Dianfan Caffrey, Martin Chapman, Henry N. Spence, John C.H. Fromme, Petra Weierstall, Uwe Stevens, Raymond C. Cherezov, Vadim Melcher, Karsten Xu, H. Eric Sci Data Data Descriptor Serial femtosecond X-ray crystallography (SFX) using an X-ray free electron laser (XFEL) is a recent advancement in structural biology for solving crystal structures of challenging membrane proteins, including G-protein coupled receptors (GPCRs), which often only produce microcrystals. An XFEL delivers highly intense X-ray pulses of femtosecond duration short enough to enable the collection of single diffraction images before significant radiation damage to crystals sets in. Here we report the deposition of the XFEL data and provide further details on crystallization, XFEL data collection and analysis, structure determination, and the validation of the structural model. The rhodopsin-arrestin crystal structure solved with SFX represents the first near-atomic resolution structure of a GPCR-arrestin complex, provides structural insights into understanding of arrestin-mediated GPCR signaling, and demonstrates the great potential of this SFX-XFEL technology for accelerating crystal structure determination of challenging proteins and protein complexes. Nature Publishing Group 2016-04-12 /pmc/articles/PMC4828943/ /pubmed/27070998 http://dx.doi.org/10.1038/sdata.2016.21 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse.
spellingShingle Data Descriptor
Zhou, X. Edward
Gao, Xiang
Barty, Anton
Kang, Yanyong
He, Yuanzheng
Liu, Wei
Ishchenko, Andrii
White, Thomas A.
Yefanov, Oleksandr
Han, Gye Won
Xu, Qingping
de Waal, Parker W.
Suino-Powell, Kelly M.
Boutet, Sébastien
Williams, Garth J.
Wang, Meitian
Li, Dianfan
Caffrey, Martin
Chapman, Henry N.
Spence, John C.H.
Fromme, Petra
Weierstall, Uwe
Stevens, Raymond C.
Cherezov, Vadim
Melcher, Karsten
Xu, H. Eric
X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex
title X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex
title_full X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex
title_fullStr X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex
title_full_unstemmed X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex
title_short X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex
title_sort x-ray laser diffraction for structure determination of the rhodopsin-arrestin complex
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4828943/
https://www.ncbi.nlm.nih.gov/pubmed/27070998
http://dx.doi.org/10.1038/sdata.2016.21
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