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Estimating population size using single‐nucleotide polymorphism‐based pedigree data
Reliable population estimates are an important aspect of sustainable wildlife management and conservation but can be difficult to obtain for rare and elusive species. Here, we test a new census method based on pedigree reconstruction recently developed by Creel and Rosenblatt (2013). Using a panel o...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829048/ https://www.ncbi.nlm.nih.gov/pubmed/27096081 http://dx.doi.org/10.1002/ece3.2076 |
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author | Spitzer, Robert Norman, Anita J. Schneider, Michael Spong, Göran |
author_facet | Spitzer, Robert Norman, Anita J. Schneider, Michael Spong, Göran |
author_sort | Spitzer, Robert |
collection | PubMed |
description | Reliable population estimates are an important aspect of sustainable wildlife management and conservation but can be difficult to obtain for rare and elusive species. Here, we test a new census method based on pedigree reconstruction recently developed by Creel and Rosenblatt (2013). Using a panel of 96 single‐nucleotide polymorphisms (SNPs), we genotyped fecal samples from two Swedish brown bear populations for pedigree reconstruction. Based on 433 genotypes from central Sweden (CS) and 265 from northern Sweden (NS), the population estimates (N = 630 for CS, N = 408 for NS) fell within the 95% CI of the official estimates. The precision and accuracy improved with increasing sampling intensity. Like genetic capture–mark–recapture methods, this method can be applied to data from a single sampling session. Pedigree reconstruction combined with noninvasive genetic sampling may thus augment population estimates, particularly for rare and elusive species for which sampling may be challenging. |
format | Online Article Text |
id | pubmed-4829048 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-48290482016-04-19 Estimating population size using single‐nucleotide polymorphism‐based pedigree data Spitzer, Robert Norman, Anita J. Schneider, Michael Spong, Göran Ecol Evol Original Research Reliable population estimates are an important aspect of sustainable wildlife management and conservation but can be difficult to obtain for rare and elusive species. Here, we test a new census method based on pedigree reconstruction recently developed by Creel and Rosenblatt (2013). Using a panel of 96 single‐nucleotide polymorphisms (SNPs), we genotyped fecal samples from two Swedish brown bear populations for pedigree reconstruction. Based on 433 genotypes from central Sweden (CS) and 265 from northern Sweden (NS), the population estimates (N = 630 for CS, N = 408 for NS) fell within the 95% CI of the official estimates. The precision and accuracy improved with increasing sampling intensity. Like genetic capture–mark–recapture methods, this method can be applied to data from a single sampling session. Pedigree reconstruction combined with noninvasive genetic sampling may thus augment population estimates, particularly for rare and elusive species for which sampling may be challenging. John Wiley and Sons Inc. 2016-04-06 /pmc/articles/PMC4829048/ /pubmed/27096081 http://dx.doi.org/10.1002/ece3.2076 Text en © 2016 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Spitzer, Robert Norman, Anita J. Schneider, Michael Spong, Göran Estimating population size using single‐nucleotide polymorphism‐based pedigree data |
title | Estimating population size using single‐nucleotide polymorphism‐based pedigree data |
title_full | Estimating population size using single‐nucleotide polymorphism‐based pedigree data |
title_fullStr | Estimating population size using single‐nucleotide polymorphism‐based pedigree data |
title_full_unstemmed | Estimating population size using single‐nucleotide polymorphism‐based pedigree data |
title_short | Estimating population size using single‐nucleotide polymorphism‐based pedigree data |
title_sort | estimating population size using single‐nucleotide polymorphism‐based pedigree data |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829048/ https://www.ncbi.nlm.nih.gov/pubmed/27096081 http://dx.doi.org/10.1002/ece3.2076 |
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