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Estimating population size using single‐nucleotide polymorphism‐based pedigree data

Reliable population estimates are an important aspect of sustainable wildlife management and conservation but can be difficult to obtain for rare and elusive species. Here, we test a new census method based on pedigree reconstruction recently developed by Creel and Rosenblatt (2013). Using a panel o...

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Detalles Bibliográficos
Autores principales: Spitzer, Robert, Norman, Anita J., Schneider, Michael, Spong, Göran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829048/
https://www.ncbi.nlm.nih.gov/pubmed/27096081
http://dx.doi.org/10.1002/ece3.2076
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author Spitzer, Robert
Norman, Anita J.
Schneider, Michael
Spong, Göran
author_facet Spitzer, Robert
Norman, Anita J.
Schneider, Michael
Spong, Göran
author_sort Spitzer, Robert
collection PubMed
description Reliable population estimates are an important aspect of sustainable wildlife management and conservation but can be difficult to obtain for rare and elusive species. Here, we test a new census method based on pedigree reconstruction recently developed by Creel and Rosenblatt (2013). Using a panel of 96 single‐nucleotide polymorphisms (SNPs), we genotyped fecal samples from two Swedish brown bear populations for pedigree reconstruction. Based on 433 genotypes from central Sweden (CS) and 265 from northern Sweden (NS), the population estimates (N = 630 for CS, N = 408 for NS) fell within the 95% CI of the official estimates. The precision and accuracy improved with increasing sampling intensity. Like genetic capture–mark–recapture methods, this method can be applied to data from a single sampling session. Pedigree reconstruction combined with noninvasive genetic sampling may thus augment population estimates, particularly for rare and elusive species for which sampling may be challenging.
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spelling pubmed-48290482016-04-19 Estimating population size using single‐nucleotide polymorphism‐based pedigree data Spitzer, Robert Norman, Anita J. Schneider, Michael Spong, Göran Ecol Evol Original Research Reliable population estimates are an important aspect of sustainable wildlife management and conservation but can be difficult to obtain for rare and elusive species. Here, we test a new census method based on pedigree reconstruction recently developed by Creel and Rosenblatt (2013). Using a panel of 96 single‐nucleotide polymorphisms (SNPs), we genotyped fecal samples from two Swedish brown bear populations for pedigree reconstruction. Based on 433 genotypes from central Sweden (CS) and 265 from northern Sweden (NS), the population estimates (N = 630 for CS, N = 408 for NS) fell within the 95% CI of the official estimates. The precision and accuracy improved with increasing sampling intensity. Like genetic capture–mark–recapture methods, this method can be applied to data from a single sampling session. Pedigree reconstruction combined with noninvasive genetic sampling may thus augment population estimates, particularly for rare and elusive species for which sampling may be challenging. John Wiley and Sons Inc. 2016-04-06 /pmc/articles/PMC4829048/ /pubmed/27096081 http://dx.doi.org/10.1002/ece3.2076 Text en © 2016 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Spitzer, Robert
Norman, Anita J.
Schneider, Michael
Spong, Göran
Estimating population size using single‐nucleotide polymorphism‐based pedigree data
title Estimating population size using single‐nucleotide polymorphism‐based pedigree data
title_full Estimating population size using single‐nucleotide polymorphism‐based pedigree data
title_fullStr Estimating population size using single‐nucleotide polymorphism‐based pedigree data
title_full_unstemmed Estimating population size using single‐nucleotide polymorphism‐based pedigree data
title_short Estimating population size using single‐nucleotide polymorphism‐based pedigree data
title_sort estimating population size using single‐nucleotide polymorphism‐based pedigree data
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829048/
https://www.ncbi.nlm.nih.gov/pubmed/27096081
http://dx.doi.org/10.1002/ece3.2076
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