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Possible identification of CENP-C in fish and the presence of the CENP-C motif in M18BP1 of vertebrates.

The centromeric protein CENP-C is a base component of the kinetochore. This protein, along with CENP-A has been shown to adaptively evolve in a number of animal and plant species. In order to determine if CENP-C also evolves in fish species, I attempted to retrieve fish CENP-C sequences from GenBank...

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Detalles Bibliográficos
Autor principal: Kral, Leos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4830207/
https://www.ncbi.nlm.nih.gov/pubmed/27127616
http://dx.doi.org/10.12688/f1000research.6823.2
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author Kral, Leos
author_facet Kral, Leos
author_sort Kral, Leos
collection PubMed
description The centromeric protein CENP-C is a base component of the kinetochore. This protein, along with CENP-A has been shown to adaptively evolve in a number of animal and plant species. In order to determine if CENP-C also evolves in fish species, I attempted to retrieve fish CENP-C sequences from GenBank. No Teleostei CENP-C sequences were found either by name or by BLASTP searches with the vertebrate CENP-C motif sequence. A number of putative Teleostei protein sequences were identified in GenBank that have homology to the C-terminal cupin domain of vertebrate CENP-C. These proteins only have partial homology to the CENP-C motif, but evidence is presented that makes it likely that these fish proteins are orthologs of CENP-C. Interestingly, it was also discovered that the CENP-C motif sequence is also mostly present in M18BP1 proteins of fish and some other vertebrates but not in mammals. This finding may have implications for CENP-C and M18BP1 assembly in centromeric regions of different vertebrate taxa.
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spelling pubmed-48302072016-04-27 Possible identification of CENP-C in fish and the presence of the CENP-C motif in M18BP1 of vertebrates. Kral, Leos F1000Res Observation Article The centromeric protein CENP-C is a base component of the kinetochore. This protein, along with CENP-A has been shown to adaptively evolve in a number of animal and plant species. In order to determine if CENP-C also evolves in fish species, I attempted to retrieve fish CENP-C sequences from GenBank. No Teleostei CENP-C sequences were found either by name or by BLASTP searches with the vertebrate CENP-C motif sequence. A number of putative Teleostei protein sequences were identified in GenBank that have homology to the C-terminal cupin domain of vertebrate CENP-C. These proteins only have partial homology to the CENP-C motif, but evidence is presented that makes it likely that these fish proteins are orthologs of CENP-C. Interestingly, it was also discovered that the CENP-C motif sequence is also mostly present in M18BP1 proteins of fish and some other vertebrates but not in mammals. This finding may have implications for CENP-C and M18BP1 assembly in centromeric regions of different vertebrate taxa. F1000Research 2016-01-20 /pmc/articles/PMC4830207/ /pubmed/27127616 http://dx.doi.org/10.12688/f1000research.6823.2 Text en Copyright: © 2016 Kral L http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Observation Article
Kral, Leos
Possible identification of CENP-C in fish and the presence of the CENP-C motif in M18BP1 of vertebrates.
title Possible identification of CENP-C in fish and the presence of the CENP-C motif in M18BP1 of vertebrates.
title_full Possible identification of CENP-C in fish and the presence of the CENP-C motif in M18BP1 of vertebrates.
title_fullStr Possible identification of CENP-C in fish and the presence of the CENP-C motif in M18BP1 of vertebrates.
title_full_unstemmed Possible identification of CENP-C in fish and the presence of the CENP-C motif in M18BP1 of vertebrates.
title_short Possible identification of CENP-C in fish and the presence of the CENP-C motif in M18BP1 of vertebrates.
title_sort possible identification of cenp-c in fish and the presence of the cenp-c motif in m18bp1 of vertebrates.
topic Observation Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4830207/
https://www.ncbi.nlm.nih.gov/pubmed/27127616
http://dx.doi.org/10.12688/f1000research.6823.2
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