Cargando…

Whole-genome sequence data uncover loss of genetic diversity due to selection

BACKGROUND: Whole-genome sequence (WGS) data give access to more complete structural genetic information of individuals, including rare variants, not fully covered by single nucleotide polymorphism chips. We used WGS to investigate the amount of genetic diversity remaining after selection using opti...

Descripción completa

Detalles Bibliográficos
Autores principales:	Eynard, Sonia E., Windig, Jack J., Hiemstra, Sipke J., Calus, Mario P. L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4831198/ https://www.ncbi.nlm.nih.gov/pubmed/27080121 http://dx.doi.org/10.1186/s12711-016-0210-4

Ejemplares similares

The effect of rare alleles on estimated genomic relationships from whole genome sequence data
por: Eynard, Sonia E, et al.
Publicado: (2015)

Trends in genome-wide and region-specific genetic diversity in the Dutch-Flemish Holstein–Friesian breeding program from 1986 to 2015
por: Doekes, Harmen P., et al.
Publicado: (2018)

Which Individuals To Choose To Update the Reference Population? Minimizing the Loss of Genetic Diversity in Animal Genomic Selection Programs
por: Eynard, Sonia E., et al.
Publicado: (2017)

Inbreeding depression due to recent and ancient inbreeding in Dutch Holstein–Friesian dairy cattle
por: Doekes, Harmen P., et al.
Publicado: (2019)

Estimating genetic diversity across the neutral genome with the use of dense marker maps
por: Engelsma, Krista A, et al.
Publicado: (2010)

Prediction of the reliability of genomic breeding values for crossbred performance
por: Vandenplas, Jérémie, et al.
Publicado: (2017)

Genomic prediction based on data from three layer lines using non-linear regression models
por: Huang, Heyun, et al.
Publicado: (2014)

Farm animal genetic resources and the COVID-19 pandemic
por: Gandini, Gustavo, et al.
Publicado: (2021)

Genomic prediction based on data from three layer lines: a comparison between linear methods
por: Calus, Mario PL, et al.
Publicado: (2014)

Assigning breed origin to alleles in crossbred animals
por: Vandenplas, Jérémie, et al.
Publicado: (2016)

Retriever and Pointer: Software to Evaluate Inbreeding and Genetic Management in Captive Populations
por: Windig, Jack J., et al.
Publicado: (2021)

Conservation priorities for Ethiopian sheep breeds combining threat status, breed merits and contributions to genetic diversity
por: Gizaw, Solomon, et al.
Publicado: (2008)

Whole Exome Sequencing Uncovered the Genetic Architecture of Growth Hormone Deficiency Patients
por: Yu, Chenxi, et al.
Publicado: (2021)

Efficient genomic prediction based on whole-genome sequence data using split-and-merge Bayesian variable selection
por: Calus, Mario P. L., et al.
Publicado: (2016)

Whole-genome sequencing revealed genetic diversity and selection of Guangxi indigenous chickens
por: Sun, Junli, et al.
Publicado: (2022)

Optimizing ex situ genetic resource collections for European livestock conservation
por: De Oliveira Silva, Rafael, et al.
Publicado: (2018)

Genetic diversity and signatures of selection in BoHuai goat revealed by whole-genome sequencing
por: Yao, Zhi, et al.
Publicado: (2023)

Effects of the number of markers per haplotype and clustering of haplotypes on the accuracy of QTL mapping and prediction of genomic breeding values
por: Calus, Mario PL, et al.
Publicado: (2009)

Population structure, genetic diversity, and selective signature of Chaka sheep revealed by whole genome sequencing
por: Cheng, Jie, et al.
Publicado: (2020)

Genetic Diversity and Selection Signatures in Jianchang Black Goats Revealed by Whole-Genome Sequencing Data
por: Sun, Xueliang, et al.
Publicado: (2022)

Whole-genome sequencing revealed genetic diversity, structure and patterns of selection in Guizhou indigenous chickens
por: Xu, Dan, et al.
Publicado: (2023)

Genetic Diversity and Signatures of Selection in the Roughskin Sculpin (Trachidermus fasciatus) Revealed by Whole Genome Sequencing
por: San, Lize, et al.
Publicado: (2023)

Uncovering Novel Prognostic Factors of Sudden Sensorineural Hearing Loss by Whole-Genome Sequencing of Cell-Free DNA
por: Yang, Anni, et al.
Publicado: (2022)

Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads
por: Nazeen, Sumaiya, et al.
Publicado: (2020)

DEVOUR: Deleterious Variants on Uncovered Regions in Whole-Exome Sequencing
por: Türk, Erdem, et al.
Publicado: (2023)

Unique genetic signature and selection footprints in Dutch population of German Longhaired Pointer dogs
por: Yu, Yun, et al.
Publicado: (2022)

Whole genome sequencing revealed genetic diversity, population structure, and selective signature of Panou Tibetan sheep
por: Shi, Huibin, et al.
Publicado: (2023)

Identification of runs of homozygosity in Western honey bees (Apis mellifera) using whole‐genome sequencing data
por: Gmel, Annik Imogen, et al.
Publicado: (2023)

The long-term effects of genomic selection: 1. Response to selection, additive genetic variance, and genetic architecture
por: Wientjes, Yvonne C. J., et al.
Publicado: (2022)

Brugada syndrome uncovered in patient with pseudohypoaldosteronism due to hyperkalaemia
por: Barforoshi, Shiva, et al.
Publicado: (2023)

Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle
por: van Binsbergen, Rianne, et al.
Publicado: (2014)

Whole-Genome Sequencing of Retinoblastoma Reveals the Diversity of Rearrangements Disrupting RB1 and Uncovers a Treatment-Related Mutational Signature
por: Davies, Helen R., et al.
Publicado: (2021)

Uncovering Essential Tremor Genetics: The Promise of Long-Read Sequencing
por: Marsili, Luca, et al.
Publicado: (2022)

Identification of quantitative trait loci associated with calmness and gentleness in honey bees using whole‐genome sequences
por: Guichard, M., et al.
Publicado: (2021)

Impact of merging commercial breeding lines on the genetic diversity of Landrace pigs
por: Hulsegge, Ina, et al.
Publicado: (2019)

Contribution of rare and low-frequency whole-genome sequence variants to complex traits variation in dairy cattle
por: Zhang, Qianqian, et al.
Publicado: (2017)

Shared genetic susceptibilities for irritable bowel syndrome and depressive disorder in Chinese patients uncovered by pooled whole-exome sequencing
por: Zhu, Shiwei, et al.
Publicado: (2020)

Whole exome sequencing uncovered highly penetrant recessive mutations for a spectrum of rare genetic pediatric diseases in Bangladesh
por: Akter, Hosneara, et al.
Publicado: (2021)

Whole exome sequencing in Chinese mucinous pulmonary adenocarcinoma uncovers specific genetic variations different from lung adenocarcinoma
por: Zhang, Chenyue, et al.
Publicado: (2022)

Whole-exome sequencing of pancreatic cancer defines genetic diversity and therapeutic targets
por: Witkiewicz, Agnieszka K., et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_nbspnql5t0fd79d8487eg435bg