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Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea
Colletotrichum acutatum is a destructive fungal pathogen which causes anthracnose in a wide range of crops. Here we report the whole genome sequence and annotation of C. acutatum strain KC05, isolated from an infected pepper in Kangwon, South Korea. Genomic DNA from the KC05 strain was used for the...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4832045/ https://www.ncbi.nlm.nih.gov/pubmed/27114908 http://dx.doi.org/10.1016/j.gdata.2016.03.007 |
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author | Han, Joon-Hee Chon, Jae-Kyung Ahn, Jong-Hwa Choi, Ik-Young Lee, Yong-Hwan Kim, Kyoung Su |
author_facet | Han, Joon-Hee Chon, Jae-Kyung Ahn, Jong-Hwa Choi, Ik-Young Lee, Yong-Hwan Kim, Kyoung Su |
author_sort | Han, Joon-Hee |
collection | PubMed |
description | Colletotrichum acutatum is a destructive fungal pathogen which causes anthracnose in a wide range of crops. Here we report the whole genome sequence and annotation of C. acutatum strain KC05, isolated from an infected pepper in Kangwon, South Korea. Genomic DNA from the KC05 strain was used for the whole genome sequencing using a PacBio sequencer and the MiSeq system. The KC05 genome was determined to be 52,190,760 bp in size with a G + C content of 51.73% in 27 scaffolds and to contain 13,559 genes with an average length of 1516 bp. Gene prediction and annotation were performed by incorporating RNA-Seq data. The genome sequence of the KC05 was deposited at DDBJ/ENA/GenBank under the accession number LUXP00000000. |
format | Online Article Text |
id | pubmed-4832045 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-48320452016-04-25 Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea Han, Joon-Hee Chon, Jae-Kyung Ahn, Jong-Hwa Choi, Ik-Young Lee, Yong-Hwan Kim, Kyoung Su Genom Data Data in Brief Colletotrichum acutatum is a destructive fungal pathogen which causes anthracnose in a wide range of crops. Here we report the whole genome sequence and annotation of C. acutatum strain KC05, isolated from an infected pepper in Kangwon, South Korea. Genomic DNA from the KC05 strain was used for the whole genome sequencing using a PacBio sequencer and the MiSeq system. The KC05 genome was determined to be 52,190,760 bp in size with a G + C content of 51.73% in 27 scaffolds and to contain 13,559 genes with an average length of 1516 bp. Gene prediction and annotation were performed by incorporating RNA-Seq data. The genome sequence of the KC05 was deposited at DDBJ/ENA/GenBank under the accession number LUXP00000000. Elsevier 2016-03-28 /pmc/articles/PMC4832045/ /pubmed/27114908 http://dx.doi.org/10.1016/j.gdata.2016.03.007 Text en © 2016 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data in Brief Han, Joon-Hee Chon, Jae-Kyung Ahn, Jong-Hwa Choi, Ik-Young Lee, Yong-Hwan Kim, Kyoung Su Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea |
title | Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea |
title_full | Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea |
title_fullStr | Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea |
title_full_unstemmed | Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea |
title_short | Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea |
title_sort | whole genome sequence and genome annotation of colletotrichum acutatum, causal agent of anthracnose in pepper plants in south korea |
topic | Data in Brief |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4832045/ https://www.ncbi.nlm.nih.gov/pubmed/27114908 http://dx.doi.org/10.1016/j.gdata.2016.03.007 |
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