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Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea

Colletotrichum acutatum is a destructive fungal pathogen which causes anthracnose in a wide range of crops. Here we report the whole genome sequence and annotation of C. acutatum strain KC05, isolated from an infected pepper in Kangwon, South Korea. Genomic DNA from the KC05 strain was used for the...

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Autores principales: Han, Joon-Hee, Chon, Jae-Kyung, Ahn, Jong-Hwa, Choi, Ik-Young, Lee, Yong-Hwan, Kim, Kyoung Su
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4832045/
https://www.ncbi.nlm.nih.gov/pubmed/27114908
http://dx.doi.org/10.1016/j.gdata.2016.03.007
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author Han, Joon-Hee
Chon, Jae-Kyung
Ahn, Jong-Hwa
Choi, Ik-Young
Lee, Yong-Hwan
Kim, Kyoung Su
author_facet Han, Joon-Hee
Chon, Jae-Kyung
Ahn, Jong-Hwa
Choi, Ik-Young
Lee, Yong-Hwan
Kim, Kyoung Su
author_sort Han, Joon-Hee
collection PubMed
description Colletotrichum acutatum is a destructive fungal pathogen which causes anthracnose in a wide range of crops. Here we report the whole genome sequence and annotation of C. acutatum strain KC05, isolated from an infected pepper in Kangwon, South Korea. Genomic DNA from the KC05 strain was used for the whole genome sequencing using a PacBio sequencer and the MiSeq system. The KC05 genome was determined to be 52,190,760 bp in size with a G + C content of 51.73% in 27 scaffolds and to contain 13,559 genes with an average length of 1516 bp. Gene prediction and annotation were performed by incorporating RNA-Seq data. The genome sequence of the KC05 was deposited at DDBJ/ENA/GenBank under the accession number LUXP00000000.
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spelling pubmed-48320452016-04-25 Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea Han, Joon-Hee Chon, Jae-Kyung Ahn, Jong-Hwa Choi, Ik-Young Lee, Yong-Hwan Kim, Kyoung Su Genom Data Data in Brief Colletotrichum acutatum is a destructive fungal pathogen which causes anthracnose in a wide range of crops. Here we report the whole genome sequence and annotation of C. acutatum strain KC05, isolated from an infected pepper in Kangwon, South Korea. Genomic DNA from the KC05 strain was used for the whole genome sequencing using a PacBio sequencer and the MiSeq system. The KC05 genome was determined to be 52,190,760 bp in size with a G + C content of 51.73% in 27 scaffolds and to contain 13,559 genes with an average length of 1516 bp. Gene prediction and annotation were performed by incorporating RNA-Seq data. The genome sequence of the KC05 was deposited at DDBJ/ENA/GenBank under the accession number LUXP00000000. Elsevier 2016-03-28 /pmc/articles/PMC4832045/ /pubmed/27114908 http://dx.doi.org/10.1016/j.gdata.2016.03.007 Text en © 2016 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Han, Joon-Hee
Chon, Jae-Kyung
Ahn, Jong-Hwa
Choi, Ik-Young
Lee, Yong-Hwan
Kim, Kyoung Su
Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea
title Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea
title_full Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea
title_fullStr Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea
title_full_unstemmed Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea
title_short Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea
title_sort whole genome sequence and genome annotation of colletotrichum acutatum, causal agent of anthracnose in pepper plants in south korea
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4832045/
https://www.ncbi.nlm.nih.gov/pubmed/27114908
http://dx.doi.org/10.1016/j.gdata.2016.03.007
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