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Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection

Abalone (Haliotis discus hannai) is one of the most valuable marine aquatic species in Korea, Japan and China. Tremendous exposure to bacterial infection is common in aquaculture environment, especially by Vibrio sp. infections. It’s therefore necessary and urgent to understand the mechanism of H. d...

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Autores principales: Nam, Bo-Hye, Jung, Myunghee, Subramaniyam, Sathiyamoorthy, Yoo, Seung-il, Markkandan, Kesavan, Moon, Ji-Young, Kim, Young-Ok, Kim, Dong-Gyun, An, Cheul Min, Shin, Younhee, Jung, Ho-jin, Park, Jun-hyung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4835058/
https://www.ncbi.nlm.nih.gov/pubmed/27088873
http://dx.doi.org/10.1371/journal.pone.0153474
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author Nam, Bo-Hye
Jung, Myunghee
Subramaniyam, Sathiyamoorthy
Yoo, Seung-il
Markkandan, Kesavan
Moon, Ji-Young
Kim, Young-Ok
Kim, Dong-Gyun
An, Cheul Min
Shin, Younhee
Jung, Ho-jin
Park, Jun-hyung
author_facet Nam, Bo-Hye
Jung, Myunghee
Subramaniyam, Sathiyamoorthy
Yoo, Seung-il
Markkandan, Kesavan
Moon, Ji-Young
Kim, Young-Ok
Kim, Dong-Gyun
An, Cheul Min
Shin, Younhee
Jung, Ho-jin
Park, Jun-hyung
author_sort Nam, Bo-Hye
collection PubMed
description Abalone (Haliotis discus hannai) is one of the most valuable marine aquatic species in Korea, Japan and China. Tremendous exposure to bacterial infection is common in aquaculture environment, especially by Vibrio sp. infections. It’s therefore necessary and urgent to understand the mechanism of H. discus hannai host defense against Vibrio parahemolyticus infection. However studies on its immune system are hindered by the lack of genomic resources. In the present study, we sequenced the transcriptome of control and bacterial challenged H. discus hannai tissues. Totally, 138 MB of reference transcriptome were obtained from de novo assembly of 34 GB clean bases from ten different libraries and annotated with the biological terms (GO and KEGG). A total of 10,575 transcripts exhibiting the differentially expression at least one pair of comparison and the functional annotations highlight genes related to immune response, cell adhesion, immune regulators, redox molecules and mitochondrial coding genes. Mostly, these groups of genes were dominated in hemocytes compared to other tissues. This work is a prerequisite for the identification of those physiological traits controlling H. discus hannai ability to survive against Vibrio infection.
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spelling pubmed-48350582016-04-29 Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection Nam, Bo-Hye Jung, Myunghee Subramaniyam, Sathiyamoorthy Yoo, Seung-il Markkandan, Kesavan Moon, Ji-Young Kim, Young-Ok Kim, Dong-Gyun An, Cheul Min Shin, Younhee Jung, Ho-jin Park, Jun-hyung PLoS One Research Article Abalone (Haliotis discus hannai) is one of the most valuable marine aquatic species in Korea, Japan and China. Tremendous exposure to bacterial infection is common in aquaculture environment, especially by Vibrio sp. infections. It’s therefore necessary and urgent to understand the mechanism of H. discus hannai host defense against Vibrio parahemolyticus infection. However studies on its immune system are hindered by the lack of genomic resources. In the present study, we sequenced the transcriptome of control and bacterial challenged H. discus hannai tissues. Totally, 138 MB of reference transcriptome were obtained from de novo assembly of 34 GB clean bases from ten different libraries and annotated with the biological terms (GO and KEGG). A total of 10,575 transcripts exhibiting the differentially expression at least one pair of comparison and the functional annotations highlight genes related to immune response, cell adhesion, immune regulators, redox molecules and mitochondrial coding genes. Mostly, these groups of genes were dominated in hemocytes compared to other tissues. This work is a prerequisite for the identification of those physiological traits controlling H. discus hannai ability to survive against Vibrio infection. Public Library of Science 2016-04-18 /pmc/articles/PMC4835058/ /pubmed/27088873 http://dx.doi.org/10.1371/journal.pone.0153474 Text en © 2016 Nam et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Nam, Bo-Hye
Jung, Myunghee
Subramaniyam, Sathiyamoorthy
Yoo, Seung-il
Markkandan, Kesavan
Moon, Ji-Young
Kim, Young-Ok
Kim, Dong-Gyun
An, Cheul Min
Shin, Younhee
Jung, Ho-jin
Park, Jun-hyung
Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection
title Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection
title_full Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection
title_fullStr Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection
title_full_unstemmed Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection
title_short Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection
title_sort transcriptome analysis revealed changes of multiple genes involved in haliotis discus hannai innate immunity during vibrio parahemolyticus infection
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4835058/
https://www.ncbi.nlm.nih.gov/pubmed/27088873
http://dx.doi.org/10.1371/journal.pone.0153474
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