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Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection
Abalone (Haliotis discus hannai) is one of the most valuable marine aquatic species in Korea, Japan and China. Tremendous exposure to bacterial infection is common in aquaculture environment, especially by Vibrio sp. infections. It’s therefore necessary and urgent to understand the mechanism of H. d...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4835058/ https://www.ncbi.nlm.nih.gov/pubmed/27088873 http://dx.doi.org/10.1371/journal.pone.0153474 |
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author | Nam, Bo-Hye Jung, Myunghee Subramaniyam, Sathiyamoorthy Yoo, Seung-il Markkandan, Kesavan Moon, Ji-Young Kim, Young-Ok Kim, Dong-Gyun An, Cheul Min Shin, Younhee Jung, Ho-jin Park, Jun-hyung |
author_facet | Nam, Bo-Hye Jung, Myunghee Subramaniyam, Sathiyamoorthy Yoo, Seung-il Markkandan, Kesavan Moon, Ji-Young Kim, Young-Ok Kim, Dong-Gyun An, Cheul Min Shin, Younhee Jung, Ho-jin Park, Jun-hyung |
author_sort | Nam, Bo-Hye |
collection | PubMed |
description | Abalone (Haliotis discus hannai) is one of the most valuable marine aquatic species in Korea, Japan and China. Tremendous exposure to bacterial infection is common in aquaculture environment, especially by Vibrio sp. infections. It’s therefore necessary and urgent to understand the mechanism of H. discus hannai host defense against Vibrio parahemolyticus infection. However studies on its immune system are hindered by the lack of genomic resources. In the present study, we sequenced the transcriptome of control and bacterial challenged H. discus hannai tissues. Totally, 138 MB of reference transcriptome were obtained from de novo assembly of 34 GB clean bases from ten different libraries and annotated with the biological terms (GO and KEGG). A total of 10,575 transcripts exhibiting the differentially expression at least one pair of comparison and the functional annotations highlight genes related to immune response, cell adhesion, immune regulators, redox molecules and mitochondrial coding genes. Mostly, these groups of genes were dominated in hemocytes compared to other tissues. This work is a prerequisite for the identification of those physiological traits controlling H. discus hannai ability to survive against Vibrio infection. |
format | Online Article Text |
id | pubmed-4835058 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-48350582016-04-29 Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection Nam, Bo-Hye Jung, Myunghee Subramaniyam, Sathiyamoorthy Yoo, Seung-il Markkandan, Kesavan Moon, Ji-Young Kim, Young-Ok Kim, Dong-Gyun An, Cheul Min Shin, Younhee Jung, Ho-jin Park, Jun-hyung PLoS One Research Article Abalone (Haliotis discus hannai) is one of the most valuable marine aquatic species in Korea, Japan and China. Tremendous exposure to bacterial infection is common in aquaculture environment, especially by Vibrio sp. infections. It’s therefore necessary and urgent to understand the mechanism of H. discus hannai host defense against Vibrio parahemolyticus infection. However studies on its immune system are hindered by the lack of genomic resources. In the present study, we sequenced the transcriptome of control and bacterial challenged H. discus hannai tissues. Totally, 138 MB of reference transcriptome were obtained from de novo assembly of 34 GB clean bases from ten different libraries and annotated with the biological terms (GO and KEGG). A total of 10,575 transcripts exhibiting the differentially expression at least one pair of comparison and the functional annotations highlight genes related to immune response, cell adhesion, immune regulators, redox molecules and mitochondrial coding genes. Mostly, these groups of genes were dominated in hemocytes compared to other tissues. This work is a prerequisite for the identification of those physiological traits controlling H. discus hannai ability to survive against Vibrio infection. Public Library of Science 2016-04-18 /pmc/articles/PMC4835058/ /pubmed/27088873 http://dx.doi.org/10.1371/journal.pone.0153474 Text en © 2016 Nam et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Nam, Bo-Hye Jung, Myunghee Subramaniyam, Sathiyamoorthy Yoo, Seung-il Markkandan, Kesavan Moon, Ji-Young Kim, Young-Ok Kim, Dong-Gyun An, Cheul Min Shin, Younhee Jung, Ho-jin Park, Jun-hyung Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection |
title | Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection |
title_full | Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection |
title_fullStr | Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection |
title_full_unstemmed | Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection |
title_short | Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection |
title_sort | transcriptome analysis revealed changes of multiple genes involved in haliotis discus hannai innate immunity during vibrio parahemolyticus infection |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4835058/ https://www.ncbi.nlm.nih.gov/pubmed/27088873 http://dx.doi.org/10.1371/journal.pone.0153474 |
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