Cargando…
Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia
Hypoxia in tumors signifies resistance to therapy. Despite a wealth of tumor histology data, including anti-pimonidazole staining, no current methods use these data to induce a quantitative characterization of chronic tumor hypoxia in time and space. We use image-processing algorithms to develop a s...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836667/ https://www.ncbi.nlm.nih.gov/pubmed/27093539 http://dx.doi.org/10.1371/journal.pone.0153623 |
_version_ | 1782427760827826176 |
---|---|
author | Sundstrom, Andrew Grabocka, Elda Bar-Sagi, Dafna Mishra, Bud |
author_facet | Sundstrom, Andrew Grabocka, Elda Bar-Sagi, Dafna Mishra, Bud |
author_sort | Sundstrom, Andrew |
collection | PubMed |
description | Hypoxia in tumors signifies resistance to therapy. Despite a wealth of tumor histology data, including anti-pimonidazole staining, no current methods use these data to induce a quantitative characterization of chronic tumor hypoxia in time and space. We use image-processing algorithms to develop a set of candidate image features that can formulate just such a quantitative description of xenographed colorectal chronic tumor hypoxia. Two features in particular give low-variance measures of chronic hypoxia near a vessel: intensity sampling that extends radially away from approximated blood vessel centroids, and multithresholding to segment tumor tissue into normal, hypoxic, and necrotic regions. From these features we derive a spatiotemporal logical expression whose truth value depends on its predicate clauses that are grounded in this histological evidence. As an alternative to the spatiotemporal logical formulation, we also propose a way to formulate a linear regression function that uses all of the image features to learn what chronic hypoxia looks like, and then gives a quantitative similarity score once it is trained on a set of histology images. |
format | Online Article Text |
id | pubmed-4836667 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-48366672016-04-29 Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia Sundstrom, Andrew Grabocka, Elda Bar-Sagi, Dafna Mishra, Bud PLoS One Research Article Hypoxia in tumors signifies resistance to therapy. Despite a wealth of tumor histology data, including anti-pimonidazole staining, no current methods use these data to induce a quantitative characterization of chronic tumor hypoxia in time and space. We use image-processing algorithms to develop a set of candidate image features that can formulate just such a quantitative description of xenographed colorectal chronic tumor hypoxia. Two features in particular give low-variance measures of chronic hypoxia near a vessel: intensity sampling that extends radially away from approximated blood vessel centroids, and multithresholding to segment tumor tissue into normal, hypoxic, and necrotic regions. From these features we derive a spatiotemporal logical expression whose truth value depends on its predicate clauses that are grounded in this histological evidence. As an alternative to the spatiotemporal logical formulation, we also propose a way to formulate a linear regression function that uses all of the image features to learn what chronic hypoxia looks like, and then gives a quantitative similarity score once it is trained on a set of histology images. Public Library of Science 2016-04-19 /pmc/articles/PMC4836667/ /pubmed/27093539 http://dx.doi.org/10.1371/journal.pone.0153623 Text en © 2016 Sundstrom et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Sundstrom, Andrew Grabocka, Elda Bar-Sagi, Dafna Mishra, Bud Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia |
title | Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia |
title_full | Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia |
title_fullStr | Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia |
title_full_unstemmed | Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia |
title_short | Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia |
title_sort | histological image processing features induce a quantitative characterization of chronic tumor hypoxia |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836667/ https://www.ncbi.nlm.nih.gov/pubmed/27093539 http://dx.doi.org/10.1371/journal.pone.0153623 |
work_keys_str_mv | AT sundstromandrew histologicalimageprocessingfeaturesinduceaquantitativecharacterizationofchronictumorhypoxia AT grabockaelda histologicalimageprocessingfeaturesinduceaquantitativecharacterizationofchronictumorhypoxia AT barsagidafna histologicalimageprocessingfeaturesinduceaquantitativecharacterizationofchronictumorhypoxia AT mishrabud histologicalimageprocessingfeaturesinduceaquantitativecharacterizationofchronictumorhypoxia |