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Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia

Hypoxia in tumors signifies resistance to therapy. Despite a wealth of tumor histology data, including anti-pimonidazole staining, no current methods use these data to induce a quantitative characterization of chronic tumor hypoxia in time and space. We use image-processing algorithms to develop a s...

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Detalles Bibliográficos
Autores principales: Sundstrom, Andrew, Grabocka, Elda, Bar-Sagi, Dafna, Mishra, Bud
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836667/
https://www.ncbi.nlm.nih.gov/pubmed/27093539
http://dx.doi.org/10.1371/journal.pone.0153623
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author Sundstrom, Andrew
Grabocka, Elda
Bar-Sagi, Dafna
Mishra, Bud
author_facet Sundstrom, Andrew
Grabocka, Elda
Bar-Sagi, Dafna
Mishra, Bud
author_sort Sundstrom, Andrew
collection PubMed
description Hypoxia in tumors signifies resistance to therapy. Despite a wealth of tumor histology data, including anti-pimonidazole staining, no current methods use these data to induce a quantitative characterization of chronic tumor hypoxia in time and space. We use image-processing algorithms to develop a set of candidate image features that can formulate just such a quantitative description of xenographed colorectal chronic tumor hypoxia. Two features in particular give low-variance measures of chronic hypoxia near a vessel: intensity sampling that extends radially away from approximated blood vessel centroids, and multithresholding to segment tumor tissue into normal, hypoxic, and necrotic regions. From these features we derive a spatiotemporal logical expression whose truth value depends on its predicate clauses that are grounded in this histological evidence. As an alternative to the spatiotemporal logical formulation, we also propose a way to formulate a linear regression function that uses all of the image features to learn what chronic hypoxia looks like, and then gives a quantitative similarity score once it is trained on a set of histology images.
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spelling pubmed-48366672016-04-29 Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia Sundstrom, Andrew Grabocka, Elda Bar-Sagi, Dafna Mishra, Bud PLoS One Research Article Hypoxia in tumors signifies resistance to therapy. Despite a wealth of tumor histology data, including anti-pimonidazole staining, no current methods use these data to induce a quantitative characterization of chronic tumor hypoxia in time and space. We use image-processing algorithms to develop a set of candidate image features that can formulate just such a quantitative description of xenographed colorectal chronic tumor hypoxia. Two features in particular give low-variance measures of chronic hypoxia near a vessel: intensity sampling that extends radially away from approximated blood vessel centroids, and multithresholding to segment tumor tissue into normal, hypoxic, and necrotic regions. From these features we derive a spatiotemporal logical expression whose truth value depends on its predicate clauses that are grounded in this histological evidence. As an alternative to the spatiotemporal logical formulation, we also propose a way to formulate a linear regression function that uses all of the image features to learn what chronic hypoxia looks like, and then gives a quantitative similarity score once it is trained on a set of histology images. Public Library of Science 2016-04-19 /pmc/articles/PMC4836667/ /pubmed/27093539 http://dx.doi.org/10.1371/journal.pone.0153623 Text en © 2016 Sundstrom et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Sundstrom, Andrew
Grabocka, Elda
Bar-Sagi, Dafna
Mishra, Bud
Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia
title Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia
title_full Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia
title_fullStr Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia
title_full_unstemmed Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia
title_short Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia
title_sort histological image processing features induce a quantitative characterization of chronic tumor hypoxia
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836667/
https://www.ncbi.nlm.nih.gov/pubmed/27093539
http://dx.doi.org/10.1371/journal.pone.0153623
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