Cargando…
Visual Detection of West Nile Virus Using Reverse Transcription Loop-Mediated Isothermal Amplification Combined with a Vertical Flow Visualization Strip
West Nile virus (WNV) causes a severe zoonosis, which can lead to a large number of casualties and considerable economic losses. A rapid and accurate identification method for WNV for use in field laboratories is urgently needed. Here, a method utilizing reverse transcription loop-mediated isotherma...
Autores principales: | , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4837158/ https://www.ncbi.nlm.nih.gov/pubmed/27148234 http://dx.doi.org/10.3389/fmicb.2016.00554 |
_version_ | 1782427804602728448 |
---|---|
author | Cao, Zengguo Wang, Hualei Wang, Lina Li, Ling Jin, Hongli Xu, Changping Feng, Na Wang, Jianzhong Li, Qian Zhao, Yongkun Wang, Tiecheng Gao, Yuwei Lu, Yiyu Yang, Songtao Xia, Xianzhu |
author_facet | Cao, Zengguo Wang, Hualei Wang, Lina Li, Ling Jin, Hongli Xu, Changping Feng, Na Wang, Jianzhong Li, Qian Zhao, Yongkun Wang, Tiecheng Gao, Yuwei Lu, Yiyu Yang, Songtao Xia, Xianzhu |
author_sort | Cao, Zengguo |
collection | PubMed |
description | West Nile virus (WNV) causes a severe zoonosis, which can lead to a large number of casualties and considerable economic losses. A rapid and accurate identification method for WNV for use in field laboratories is urgently needed. Here, a method utilizing reverse transcription loop-mediated isothermal amplification combined with a vertical flow visualization strip (RT-LAMP-VF) was developed to detect the envelope (E) gene of WNV. The RT-LAMP-VF assay could detect 10(2) copies/μl of an WNV RNA standard using a 40 min amplification reaction followed by a 2 min incubation of the amplification product on the visualization strip, and no cross-reaction with other closely related members of the Flavivirus genus was observed. The assay was further evaluated using cells and mouse brain tissues infected with a recombinant rabies virus expressing the E protein of WNV. The assay produced sensitivities of 10(1.5) TCID(50)/ml and 10(1.33) TCID(50)/ml for detection of the recombinant virus in the cells and brain tissues, respectively. Overall, the RT-LAMP-VF assay developed in this study is rapid, simple and effective, and it is therefore suitable for clinical application in the field. |
format | Online Article Text |
id | pubmed-4837158 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-48371582016-05-04 Visual Detection of West Nile Virus Using Reverse Transcription Loop-Mediated Isothermal Amplification Combined with a Vertical Flow Visualization Strip Cao, Zengguo Wang, Hualei Wang, Lina Li, Ling Jin, Hongli Xu, Changping Feng, Na Wang, Jianzhong Li, Qian Zhao, Yongkun Wang, Tiecheng Gao, Yuwei Lu, Yiyu Yang, Songtao Xia, Xianzhu Front Microbiol Microbiology West Nile virus (WNV) causes a severe zoonosis, which can lead to a large number of casualties and considerable economic losses. A rapid and accurate identification method for WNV for use in field laboratories is urgently needed. Here, a method utilizing reverse transcription loop-mediated isothermal amplification combined with a vertical flow visualization strip (RT-LAMP-VF) was developed to detect the envelope (E) gene of WNV. The RT-LAMP-VF assay could detect 10(2) copies/μl of an WNV RNA standard using a 40 min amplification reaction followed by a 2 min incubation of the amplification product on the visualization strip, and no cross-reaction with other closely related members of the Flavivirus genus was observed. The assay was further evaluated using cells and mouse brain tissues infected with a recombinant rabies virus expressing the E protein of WNV. The assay produced sensitivities of 10(1.5) TCID(50)/ml and 10(1.33) TCID(50)/ml for detection of the recombinant virus in the cells and brain tissues, respectively. Overall, the RT-LAMP-VF assay developed in this study is rapid, simple and effective, and it is therefore suitable for clinical application in the field. Frontiers Media S.A. 2016-04-20 /pmc/articles/PMC4837158/ /pubmed/27148234 http://dx.doi.org/10.3389/fmicb.2016.00554 Text en Copyright © 2016 Cao, Wang, Wang, Li, Jin, Xu, Feng, Wang, Li, Zhao, Wang, Gao, Lu, Yang and Xia. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Cao, Zengguo Wang, Hualei Wang, Lina Li, Ling Jin, Hongli Xu, Changping Feng, Na Wang, Jianzhong Li, Qian Zhao, Yongkun Wang, Tiecheng Gao, Yuwei Lu, Yiyu Yang, Songtao Xia, Xianzhu Visual Detection of West Nile Virus Using Reverse Transcription Loop-Mediated Isothermal Amplification Combined with a Vertical Flow Visualization Strip |
title | Visual Detection of West Nile Virus Using Reverse Transcription Loop-Mediated Isothermal Amplification Combined with a Vertical Flow Visualization Strip |
title_full | Visual Detection of West Nile Virus Using Reverse Transcription Loop-Mediated Isothermal Amplification Combined with a Vertical Flow Visualization Strip |
title_fullStr | Visual Detection of West Nile Virus Using Reverse Transcription Loop-Mediated Isothermal Amplification Combined with a Vertical Flow Visualization Strip |
title_full_unstemmed | Visual Detection of West Nile Virus Using Reverse Transcription Loop-Mediated Isothermal Amplification Combined with a Vertical Flow Visualization Strip |
title_short | Visual Detection of West Nile Virus Using Reverse Transcription Loop-Mediated Isothermal Amplification Combined with a Vertical Flow Visualization Strip |
title_sort | visual detection of west nile virus using reverse transcription loop-mediated isothermal amplification combined with a vertical flow visualization strip |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4837158/ https://www.ncbi.nlm.nih.gov/pubmed/27148234 http://dx.doi.org/10.3389/fmicb.2016.00554 |
work_keys_str_mv | AT caozengguo visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT wanghualei visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT wanglina visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT liling visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT jinhongli visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT xuchangping visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT fengna visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT wangjianzhong visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT liqian visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT zhaoyongkun visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT wangtiecheng visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT gaoyuwei visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT luyiyu visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT yangsongtao visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip AT xiaxianzhu visualdetectionofwestnilevirususingreversetranscriptionloopmediatedisothermalamplificationcombinedwithaverticalflowvisualizationstrip |