Cargando…

Data-based Reconstruction of Gene Regulatory Networks of Fungal Pathogens

In the emerging field of systems biology of fungal infection, one of the central roles belongs to the modeling of gene regulatory networks (GRNs). Utilizing omics-data, GRNs can be predicted by mathematical modeling. Here, we review current advances of data-based reconstruction of both small-scale a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Guthke, Reinhard, Gerber, Silvia, Conrad, Theresia, Vlaic, Sebastian, Durmuş, Saliha, Çakır, Tunahan, Sevilgen, F. E., Shelest, Ekaterina, Linde, Jörg
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2016
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840211/ https://www.ncbi.nlm.nih.gov/pubmed/27148247 http://dx.doi.org/10.3389/fmicb.2016.00570

Ejemplares similares

Editorial: Computational Systems Biology of Pathogen-Host Interactions
por: Durmuş, Saliha, et al.
Publicado: (2016)

A review on computational systems biology of pathogen–host interactions
por: Durmuş, Saliha, et al.
Publicado: (2015)

Facing the challenges of multiscale modelling of bacterial and fungal pathogen–host interactions
por: Schleicher, Jana, et al.
Publicado: (2017)

Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells
por: Linde, Jörg, et al.
Publicado: (2010)

ModuleDiscoverer: Identification of regulatory modules in protein-protein interaction networks
por: Vlaic, Sebastian, et al.
Publicado: (2018)

Infection Strategies of Bacterial and Viral Pathogens through Pathogen–Human Protein–Protein Interactions
por: Durmuş Tekir, Saliha, et al.
Publicado: (2012)

Novel Approaches for Systems Biology of Metabolism-Oriented Pathogen-Human Interactions: A Mini-Review
por: Çakır, Tunahan, et al.
Publicado: (2020)

Data- and knowledge-based modeling of gene regulatory networks: an update
por: Linde, Jörg, et al.
Publicado: (2015)

Dual-species transcriptional profiling during systemic candidiasis reveals organ-specific host-pathogen interactions
por: Hebecker, Betty, et al.
Publicado: (2016)

Corrigendum: Dual-species transcriptional profiling during systemic candidiasis reveals organ-specific host-pathogen interactions
por: Hebecker, Betty, et al.
Publicado: (2016)

Network-Based Metabolism-Centered Screening of Potential Drug Targets in Klebsiella pneumoniae at Genome Scale
por: Cesur, Müberra Fatma, et al.
Publicado: (2020)

Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator V2.0
por: Weber, Michael, et al.
Publicado: (2013)

Computational prediction of molecular pathogen-host interactions based on dual transcriptome data
por: Schulze, Sylvie, et al.
Publicado: (2015)

FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
por: Priebe, Steffen, et al.
Publicado: (2015)

Survival Strategies of Pathogenic Candida Species in Human Blood Show Independent and Specific Adaptations
por: Kämmer, Philipp, et al.
Publicado: (2020)

The extended TILAR approach: a novel tool for dynamic modeling of the transcription factor network regulating the adaption to in vitro cultivation of murine hepatocytes
por: Vlaic, Sebastian, et al.
Publicado: (2012)

Biomarker-based classification of bacterial and fungal whole-blood infections in a genome-wide expression study
por: Dix, Andreas, et al.
Publicado: (2015)

Regulatory Networks Controlling Nitrogen Sensing and Uptake in Candida albicans
por: Ramachandra, Shruthi, et al.
Publicado: (2014)

Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach
por: Linde, Jörg, et al.
Publicado: (2012)

Genome-Wide Scale-Free Network Inference for Candida albicans
por: Altwasser, Robert, et al.
Publicado: (2012)

Six potential biomarkers for bladder cancer: key proteins in cell-cycle division and apoptosis pathways
por: Inal Gültekin, Güldal, et al.
Publicado: (2022)

An Interspecies Regulatory Network Inferred from Simultaneous RNA-seq of Candida albicans Invading Innate Immune Cells
por: Tierney, Lanay, et al.
Publicado: (2012)

Specific and Novel microRNAs Are Regulated as Response to Fungal Infection in Human Dendritic Cells
por: Dix, Andreas, et al.
Publicado: (2017)

Reconstructed Metabolic Network Models Predict Flux-Level Metabolic Reprogramming in Glioblastoma
por: Özcan, Emrah, et al.
Publicado: (2016)

How to Predict Molecular Interactions between Species?
por: Schulze, Sylvie, et al.
Publicado: (2016)

Systems Biology of Microbial Infection
por: Guthke, Reinhard, et al.
Publicado: (2012)

Novel application of multi-stimuli network inference to synovial fibroblasts of rheumatoid arthritis patients
por: Kupfer, Peter, et al.
Publicado: (2014)

Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin
por: Conrad, T., et al.
Publicado: (2018)

Computational approaches for prediction of pathogen-host protein-protein interactions
por: Nourani, Esmaeil, et al.
Publicado: (2015)

The fungal α-aminoadipate pathway for lysine biosynthesis requires two enzymes of the aconitase family for the isomerization of homocitrate to homoisocitrate
por: Fazius, Felicitas, et al.
Publicado: (2012)

Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network
por: Sertbaş, Mustafa, et al.
Publicado: (2014)

Draft Genome Sequences of Symbiotic and Nonsymbiotic Rhizopus microsporus Strains CBS 344.29 and ATCC 62417
por: Horn, Fabian, et al.
Publicado: (2015)

Dual transcriptome based reconstruction of Salmonella-human integrated metabolic network to screen potential drug targets
por: Kocabaş, Kadir, et al.
Publicado: (2022)

Draft Genome Sequence of Streptomyces iranensis
por: Horn, Fabian, et al.
Publicado: (2014)

Regulatory Roles of Histone Modifications in Filamentous Fungal Pathogens
por: Lai, Yiling, et al.
Publicado: (2022)

Reconstruction of Protein-Protein Interaction Network of Insulin Signaling in Homo Sapiens
por: Durmuş Tekir, Saliha, et al.
Publicado: (2010)

Reporter pathway analysis from transcriptome data: Metabolite-centric versus Reaction-centric approach
por: Çakır, Tunahan
Publicado: (2015)

Transcription Factors in Fungi: TFome Dynamics, Three Major Families, and Dual-Specificity TFs
por: Shelest, Ekaterina
Publicado: (2017)

Draft Genome Sequence of the Fungus Penicillium brasilianum MG11
por: Horn, Fabian, et al.
Publicado: (2015)

CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes
por: Wolf, Thomas, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_4m6vrg3ktl2m264vadt7uv4uo9