Cargando…

Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite

The structural chemistry of materials containing low levels of nonstoichiometric hydrogen is difficult to determine, and producing structural models is challenging where hydrogen has no fixed crystallographic site. Here we demonstrate a computational approach employing ab initio random structure sea...

Descripción completa

Detalles Bibliográficos
Autores principales: Moran, Robert F., McKay, David, Pickard, Chris J., Berry, Andrew J., Griffin, John M., Ashbrook, Sharon E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Royal Society of Chemistry 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840454/
https://www.ncbi.nlm.nih.gov/pubmed/27020937
http://dx.doi.org/10.1039/c6cp01529h
_version_ 1782428286133993472
author Moran, Robert F.
McKay, David
Pickard, Chris J.
Berry, Andrew J.
Griffin, John M.
Ashbrook, Sharon E.
author_facet Moran, Robert F.
McKay, David
Pickard, Chris J.
Berry, Andrew J.
Griffin, John M.
Ashbrook, Sharon E.
author_sort Moran, Robert F.
collection PubMed
description The structural chemistry of materials containing low levels of nonstoichiometric hydrogen is difficult to determine, and producing structural models is challenging where hydrogen has no fixed crystallographic site. Here we demonstrate a computational approach employing ab initio random structure searching (AIRSS) to generate a series of candidate structures for hydrous wadsleyite (β-Mg(2)SiO(4) with 1.6 wt% H(2)O), a high-pressure mineral proposed as a repository for water in the Earth's transition zone. Aligning with previous experimental work, we solely consider models with Mg3 (over Mg1, Mg2 or Si) vacancies. We adapt the AIRSS method by starting with anhydrous wadsleyite, removing a single Mg(2+) and randomly placing two H(+) in a unit cell model, generating 819 candidate structures. 103 geometries were then subjected to more accurate optimisation under periodic DFT. Using this approach, we find the most favourable hydration mechanism involves protonation of two O1 sites around the Mg3 vacancy. The formation of silanol groups on O3 or O4 sites (with loss of stable O1–H hydroxyls) coincides with an increase in total enthalpy. Importantly, the approach we employ allows observables such as NMR parameters to be computed for each structure. We consider hydrous wadsleyite (∼1.6 wt%) to be dominated by protonated O1 sites, with O3/O4–H silanol groups present as defects, a model that maps well onto experimental studies at higher levels of hydration (J. M. Griffin et al., Chem. Sci., 2013, 4, 1523). The AIRSS approach adopted herein provides the crucial link between atomic-scale structure and experimental studies.
format Online
Article
Text
id pubmed-4840454
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Royal Society of Chemistry
record_format MEDLINE/PubMed
spelling pubmed-48404542016-05-02 Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite Moran, Robert F. McKay, David Pickard, Chris J. Berry, Andrew J. Griffin, John M. Ashbrook, Sharon E. Phys Chem Chem Phys Chemistry The structural chemistry of materials containing low levels of nonstoichiometric hydrogen is difficult to determine, and producing structural models is challenging where hydrogen has no fixed crystallographic site. Here we demonstrate a computational approach employing ab initio random structure searching (AIRSS) to generate a series of candidate structures for hydrous wadsleyite (β-Mg(2)SiO(4) with 1.6 wt% H(2)O), a high-pressure mineral proposed as a repository for water in the Earth's transition zone. Aligning with previous experimental work, we solely consider models with Mg3 (over Mg1, Mg2 or Si) vacancies. We adapt the AIRSS method by starting with anhydrous wadsleyite, removing a single Mg(2+) and randomly placing two H(+) in a unit cell model, generating 819 candidate structures. 103 geometries were then subjected to more accurate optimisation under periodic DFT. Using this approach, we find the most favourable hydration mechanism involves protonation of two O1 sites around the Mg3 vacancy. The formation of silanol groups on O3 or O4 sites (with loss of stable O1–H hydroxyls) coincides with an increase in total enthalpy. Importantly, the approach we employ allows observables such as NMR parameters to be computed for each structure. We consider hydrous wadsleyite (∼1.6 wt%) to be dominated by protonated O1 sites, with O3/O4–H silanol groups present as defects, a model that maps well onto experimental studies at higher levels of hydration (J. M. Griffin et al., Chem. Sci., 2013, 4, 1523). The AIRSS approach adopted herein provides the crucial link between atomic-scale structure and experimental studies. Royal Society of Chemistry 2016-04-21 2016-03-29 /pmc/articles/PMC4840454/ /pubmed/27020937 http://dx.doi.org/10.1039/c6cp01529h Text en This journal is © The Royal Society of Chemistry 2016 http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution 3.0 Unported License (http://creativecommons.org/licenses/by/3.0/) which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Chemistry
Moran, Robert F.
McKay, David
Pickard, Chris J.
Berry, Andrew J.
Griffin, John M.
Ashbrook, Sharon E.
Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
title Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
title_full Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
title_fullStr Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
title_full_unstemmed Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
title_short Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
title_sort hunting for hydrogen: random structure searching and prediction of nmr parameters of hydrous wadsleyite
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840454/
https://www.ncbi.nlm.nih.gov/pubmed/27020937
http://dx.doi.org/10.1039/c6cp01529h
work_keys_str_mv AT moranrobertf huntingforhydrogenrandomstructuresearchingandpredictionofnmrparametersofhydrouswadsleyite
AT mckaydavid huntingforhydrogenrandomstructuresearchingandpredictionofnmrparametersofhydrouswadsleyite
AT pickardchrisj huntingforhydrogenrandomstructuresearchingandpredictionofnmrparametersofhydrouswadsleyite
AT berryandrewj huntingforhydrogenrandomstructuresearchingandpredictionofnmrparametersofhydrouswadsleyite
AT griffinjohnm huntingforhydrogenrandomstructuresearchingandpredictionofnmrparametersofhydrouswadsleyite
AT ashbrooksharone huntingforhydrogenrandomstructuresearchingandpredictionofnmrparametersofhydrouswadsleyite