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Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
The structural chemistry of materials containing low levels of nonstoichiometric hydrogen is difficult to determine, and producing structural models is challenging where hydrogen has no fixed crystallographic site. Here we demonstrate a computational approach employing ab initio random structure sea...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Royal Society of Chemistry
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840454/ https://www.ncbi.nlm.nih.gov/pubmed/27020937 http://dx.doi.org/10.1039/c6cp01529h |
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author | Moran, Robert F. McKay, David Pickard, Chris J. Berry, Andrew J. Griffin, John M. Ashbrook, Sharon E. |
author_facet | Moran, Robert F. McKay, David Pickard, Chris J. Berry, Andrew J. Griffin, John M. Ashbrook, Sharon E. |
author_sort | Moran, Robert F. |
collection | PubMed |
description | The structural chemistry of materials containing low levels of nonstoichiometric hydrogen is difficult to determine, and producing structural models is challenging where hydrogen has no fixed crystallographic site. Here we demonstrate a computational approach employing ab initio random structure searching (AIRSS) to generate a series of candidate structures for hydrous wadsleyite (β-Mg(2)SiO(4) with 1.6 wt% H(2)O), a high-pressure mineral proposed as a repository for water in the Earth's transition zone. Aligning with previous experimental work, we solely consider models with Mg3 (over Mg1, Mg2 or Si) vacancies. We adapt the AIRSS method by starting with anhydrous wadsleyite, removing a single Mg(2+) and randomly placing two H(+) in a unit cell model, generating 819 candidate structures. 103 geometries were then subjected to more accurate optimisation under periodic DFT. Using this approach, we find the most favourable hydration mechanism involves protonation of two O1 sites around the Mg3 vacancy. The formation of silanol groups on O3 or O4 sites (with loss of stable O1–H hydroxyls) coincides with an increase in total enthalpy. Importantly, the approach we employ allows observables such as NMR parameters to be computed for each structure. We consider hydrous wadsleyite (∼1.6 wt%) to be dominated by protonated O1 sites, with O3/O4–H silanol groups present as defects, a model that maps well onto experimental studies at higher levels of hydration (J. M. Griffin et al., Chem. Sci., 2013, 4, 1523). The AIRSS approach adopted herein provides the crucial link between atomic-scale structure and experimental studies. |
format | Online Article Text |
id | pubmed-4840454 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-48404542016-05-02 Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite Moran, Robert F. McKay, David Pickard, Chris J. Berry, Andrew J. Griffin, John M. Ashbrook, Sharon E. Phys Chem Chem Phys Chemistry The structural chemistry of materials containing low levels of nonstoichiometric hydrogen is difficult to determine, and producing structural models is challenging where hydrogen has no fixed crystallographic site. Here we demonstrate a computational approach employing ab initio random structure searching (AIRSS) to generate a series of candidate structures for hydrous wadsleyite (β-Mg(2)SiO(4) with 1.6 wt% H(2)O), a high-pressure mineral proposed as a repository for water in the Earth's transition zone. Aligning with previous experimental work, we solely consider models with Mg3 (over Mg1, Mg2 or Si) vacancies. We adapt the AIRSS method by starting with anhydrous wadsleyite, removing a single Mg(2+) and randomly placing two H(+) in a unit cell model, generating 819 candidate structures. 103 geometries were then subjected to more accurate optimisation under periodic DFT. Using this approach, we find the most favourable hydration mechanism involves protonation of two O1 sites around the Mg3 vacancy. The formation of silanol groups on O3 or O4 sites (with loss of stable O1–H hydroxyls) coincides with an increase in total enthalpy. Importantly, the approach we employ allows observables such as NMR parameters to be computed for each structure. We consider hydrous wadsleyite (∼1.6 wt%) to be dominated by protonated O1 sites, with O3/O4–H silanol groups present as defects, a model that maps well onto experimental studies at higher levels of hydration (J. M. Griffin et al., Chem. Sci., 2013, 4, 1523). The AIRSS approach adopted herein provides the crucial link between atomic-scale structure and experimental studies. Royal Society of Chemistry 2016-04-21 2016-03-29 /pmc/articles/PMC4840454/ /pubmed/27020937 http://dx.doi.org/10.1039/c6cp01529h Text en This journal is © The Royal Society of Chemistry 2016 http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution 3.0 Unported License (http://creativecommons.org/licenses/by/3.0/) which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Chemistry Moran, Robert F. McKay, David Pickard, Chris J. Berry, Andrew J. Griffin, John M. Ashbrook, Sharon E. Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite |
title | Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
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title_full | Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
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title_fullStr | Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
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title_full_unstemmed | Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
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title_short | Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite
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title_sort | hunting for hydrogen: random structure searching and prediction of nmr parameters of hydrous wadsleyite |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840454/ https://www.ncbi.nlm.nih.gov/pubmed/27020937 http://dx.doi.org/10.1039/c6cp01529h |
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